myRT

myRT report for GCA_002085605.1_ASM208560v1

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Seq: CP016955.1 Pseudomonas aeruginosa strain RIVM-EMC2982 chromosome, complete genome (7380063 bp)
Overview 1 RT 1: 2067543-2073227 bp 2 RT 2: 4463074-4471246 bp 3 RT 3: 6083615-6091531 bp 4 RT 4: 6636002-6644843 bp 5 RT 5: 6661107-6671777 bp Neighborhood of RT #1 [2067543, 2073232] SdhE RVT_N RVT-GII YkfC HNH YgfZ HDOD Neighborhood of RT #2 [4463074, 4471440] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Neighborhood of RT #3 [6083615, 6091614] COG4271 CHD CHD RVT-GII GIIM DUF772 ABC_phnC Neighborhood of RT #4 [6636002, 6644851] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #5 [6661107, 6671842] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 2067543-2067995 bp Feature: gene Location: 2067979-2068233 bp Ori: ARG49545.1 Feature: domain Description: SdhE Location: 2067985-2068225 bp Feature: domain Description: SdhE Location: 2067985-2068225 bp Feature: gene Location: 2068309-2070030 bp Ori: ARG49546.1 Feature: domain Description: RVT_N Location: 2068366-2068603 bp Feature: domain Description: RVT_N Location: 2068366-2068603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068654-2069290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068654-2069290 bp Feature: domain Description: YkfC Location: 2069488-2069644 bp Feature: domain Description: YkfC Location: 2069488-2069644 bp Feature: domain Description: HNH Note: nucleases Location: 2069827-2069965 bp Feature: domain Description: HNH Note: nucleases Location: 2069827-2069965 bp Feature: gene Location: 2071351-2072295 bp Ori: ARG49547.1 Feature: domain Description: YgfZ Location: 2071360-2072260 bp Feature: domain Description: YgfZ Location: 2071 360-2072260 bp Feature: gene Location: 2072396-2073232 bp Ori: ARG49548.1 Feature: domain Description: HDOD Location: 2072399-2073227 bp Feature: domain Description: HDOD Location: 2072399-2073227 bp Feature: gene Location: 4463074-4464945 bp Ori: ARG51638.1 Feature: domain Description: DUF262 Location: 4463122-4463890 bp Feature: domain Description: DUF262 Location: 44631 22-4463890 bp Feature: gene Location: 4464949-4465920 bp Ori: ARG54429.1 Feature: domain Description: YeeA Location: 4465006-4465786 bp Feature: domain Description: YeeA Location: 4465006-4465786 bp Feature: gene Location: 4466727-4469747 bp Ori: ARG51639.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4467222-4467693 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4467222-4467693 bp Feature: gene Location: 4469744-4470301 bp Feature: gene Location: 4470301-4471440 bp Ori: ARG51641.1 Feature: domain Description: AAA_21 Location: 4470373-4470442 bp Feature: domain Description: AAA_21 Location: 4470373-4470442 bp Feature: domain Description: AAA_21 Location: 4470916-4471246 bp Feature: domain Description: AAA_21 Location: 447091 6-4471 246 bp Feature: gene Location: 6083615-6084526 bp Ori: ARG54479.1 Feature: domain Description: COG4271 Location: 6083840-6084509 bp Feature: domain Description: COG4271 Location: 6083840-6084509 bp Feature: gene Location: 6084607-6086151 bp Ori: ARG53134.1 Feature: domain Description: CHD Location: 6084823-6085237 bp Feature: domain Description: CHD Location: 6084823-6085237 bp Feature: domain Description: CHD Location: 6085465-6085954 bp Feature: domain Description: CHD Location: 6085465-6085954 bp Feature: gene Location: 6088146-6089414 bp Ori: ARG53135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6088359-6089016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6088359-608901 6 bp Feature: domain Description: GIIM Note: maturase Location: 6089094-6089316 bp Feature: domain Description: GIIM Note: maturase Location: 6089094-608931 6 bp Feature: gene Location: 6089803-6090444 bp Ori: ARG53136.1 Feature: domain Description: DUF772 Location: 6089953-6090148 bp Feature: domain Description: DUF772 Location: 6089953-60901 48 bp Feature: gene Location: 6090787-6091614 bp Ori: ARG53137.1 Feature: domain Description: ABC_phnC Location: 6090817-6091531 bp Feature: domain Description: ABC_phnC Location: 609081 7-6091 531 bp Feature: gene Location: 6636002-6636676 bp Ori: ARG53659.1 Feature: domain Description: NTP_transferase_like_1 Location: 6636008-6636647 bp Feature: domain Description: NTP_transferase_like_1 Location: 6636008-6636647 bp Feature: gene Location: 6636673-6637689 bp Ori: ARG53660.1 Feature: domain Description: COG3178 Location: 6636676-6637675 bp Feature: domain Description: COG31 78 Location: 6636676-6637675 bp Feature: gene Location: 6638962-6640674 bp Ori: ARG53661.1 Feature: domain Description: RVT_N Location: 6639019-6639262 bp Feature: domain Description: RVT_N Location: 663901 9-6639262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6639307-6639943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6639307-6639943 bp Feature: domain Description: YkfC Location: 6640153-6640303 bp Feature: domain Description: YkfC Location: 66401 53-6640303 bp Feature: domain Description: HNH Note: nucleases Location: 6640480-6640618 bp Feature: domain Description: HNH Note: nucleases Location: 6640480-664061 8 bp Feature: gene Location: 6640807-6643578 bp Ori: ARG53662.1 Feature: domain Description: LptD Location: 6641002-6643564 bp Feature: domain Description: LptD Location: 6641 002-6643564 bp Feature: gene Location: 6643559-6644851 bp Ori: ARG53663.1 Feature: domain Description: PRK10770 Location: 6643649-6644843 bp Feature: domain Description: PRK1 0770 Location: 6643649-6644843 bp Feature: gene Location: 6661107-6662960 bp Ori: ARG53681.1 Feature: domain Description: PRK05658 Location: 6661119-6662958 bp Feature: domain Description: PRK05658 Location: 6661 1 1 9-6662958 bp Feature: gene Location: 6663067-6666804 bp Ori: ARG53682.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 6663175-6663832 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 66631 75-6663832 bp Feature: domain Description: PRK09776 Location: 6664045-6664516 bp Feature: domain Description: PRK09776 Location: 6664045-666451 6 bp Feature: domain Description: PAS Location: 6664573-6665098 bp Feature: domain Description: PAS Location: 6664573-6665098 bp Feature: domain Description: PRK10060 Location: 6665110-6666754 bp Feature: domain Description: PRK1 0060 Location: 66651 1 0-6666754 bp Feature: gene Location: 6667885-6669570 bp Ori: ARG53683.1 Feature: domain Description: RVT_N Location: 6667942-6668182 bp Feature: domain Description: RVT_N Location: 6667942-66681 82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6668230-6668866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6668230-6668866 bp Feature: domain Description: GIIM Note: maturase Location: 6668920-6669151 bp Feature: domain Description: GIIM Note: maturase Location: 6668920-66691 51 bp Feature: domain Description: HNH Note: nucleases Location: 6669403-6669541 bp Feature: domain Description: HNH Note: nucleases Location: 6669403-6669541 bp Feature: gene Location: 6670293-6671414 bp Ori: ARG53684.1 Feature: domain Description: COG3177 Location: 6670311-6671403 bp Feature: domain Description: COG31 77 Location: 667031 1 -6671 403 bp Feature: gene Location: 6671507-6671842 bp Feature: domain Description: NERD Location: 6671606-6671777 bp Feature: domain Description: NERD Location: 6671 606-6671 777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668), DUF262 (pfam03235), YeeA (COG1002), RVT-UG5
AAA_21 (pfam13304), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315), NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), COG3177 (Fic family protein ), NERD (pfam08378)