myRT

myRT report for GCA_002104575.1_ASM210457v1

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Seq: CP020746.1 Bacillus mycoides strain Gnyt1 plasmid unnamed3, complete sequence (102550 bp)
Overview 1 RT 1: 16468-21287 bp Neighborhood of RT #1 [16468, 21287] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 16468-16854 bp Feature: gene Location: 16864-17250 bp Feature: gene Location: 17318-19132 bp Ori: ARJ25727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17582-18413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7582-1 841 3 bp Feature: domain Description: Intron_maturas2 Location: 18494-18782 bp Feature: domain Description: Intron_maturas2 Location: 1 8494-1 8782 bp Feature: domain Description: HNHc Note: nucleases Location: 18962-19103 bp Feature: domain Description: HNHc Note: nucleases Location: 1 8962-1 91 03 bp Feature: gene Location: 20013-20474 bp Feature: gene Location: 20658-21287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CP020744.1 Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence (460379 bp)
Overview 1 RT 1: 166920-170811 bp 2 RT 2: 301075-305131 bp 3 RT 3: 318886-328671 bp Neighborhood of RT #1 [166920, 170810] COG3666 DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #2 [301075, 305160] DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_1 SpoOE-like Neighborhood of RT #3 [318886, 328676] RVT-GII Intron_maturas2 HNHc RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma XRE Feature: gene Location: 166920-167126 bp Feature: domain Description: COG3666 Location: 166959-167127 bp Feature: domain Description: COG3666 Location: 166959-16712 7 bp Feature: gene Location: 167419-167796 bp Feature: domain Description: DDE_Tnp_1 Location: 167428-167530 bp Feature: domain Description: DDE_Tnp_1 Location: 16742 8-167530 bp Feature: gene Location: 167943-169247 bp Ori: ARJ25352.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168228-168867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1682 2 8-168867 bp Feature: domain Description: GIIM Note: maturase Location: 168942-169167 bp Feature: domain Description: GIIM Note: maturase Location: 168942 -169167 bp Feature: gene Location: 169421-169600 bp Feature: gene Location: 169767-170810 bp Feature: domain Description: DDE_Tnp_1 Location: 170127-170811 bp Feature: domain Description: DDE_Tnp_1 Location: 17012 7-170811 bp Feature: gene Location: 301075-301452 bp Feature: gene Location: 301500-301875 bp Feature: domain Description: DDE_Tnp_1 Location: 301509-301611 bp Feature: domain Description: DDE_Tnp_1 Location: 301509-301611 bp Feature: gene Location: 302019-303326 bp Ori: ARJ25465.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302304-302943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 304-302 943 bp Feature: domain Description: GIIM Note: maturase Location: 303018-303243 bp Feature: domain Description: GIIM Note: maturase Location: 303018-3032 43 bp Feature: gene Location: 303826-304875 bp Feature: domain Description: DDE_Tnp_1 Location: 304186-304870 bp Feature: domain Description: DDE_Tnp_1 Location: 304186-304870 bp Feature: gene Location: 304996-305160 bp Ori: ARJ25466.1 Feature: domain Description: SpoOE-like Location: 305014-305131 bp Feature: domain Description: SpoOE-like Location: 305014-305131 bp Feature: gene Location: 318886-319278 bp Feature: gene Location: 319296-320807 bp Feature: gene Location: 321393-323210 bp Ori: ARJ25480.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321663-322488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 1663-32 2 488 bp Feature: domain Description: Intron_maturas2 Location: 322569-322860 bp Feature: domain Description: Intron_maturas2 Location: 32 2 569-32 2 860 bp Feature: domain Description: HNHc Note: nucleases Location: 323007-323184 bp Feature: domain Description: HNHc Note: nucleases Location: 32 3007-32 3184 bp Feature: gene Location: 323311-323517 bp Feature: gene Location: 324189-326063 bp Ori: ARJ25481.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324489-325194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 4489-32 5194 bp Feature: domain Description: GIIM Note: maturase Location: 325308-325476 bp Feature: domain Description: GIIM Note: maturase Location: 32 5308-32 5476 bp Feature: gene Location: 326296-328146 bp Ori: ARJ25482.1 Feature: domain Description: TraG-D_C Location: 326308-326626 bp Feature: domain Description: TraG-D_C Location: 32 6308-32 662 6 bp Feature: domain Description: Ftsk_gamma Location: 327058-327238 bp Feature: domain Description: Ftsk_gamma Location: 32 7058-32 72 38 bp Feature: domain Description: Ftsk_gamma Location: 327391-327547 bp Feature: domain Description: Ftsk_gamma Location: 32 7391-32 7547 bp Feature: gene Location: 328476-328676 bp Ori: ARJ25602.1 Feature: domain Description: XRE Location: 328485-328671 bp Feature: domain Description: XRE Location: 32 8485-32 8671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), SpoOE-like (pfam09388), Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), XRE (COG1476)

Seq: CP020749.1 Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence (64682 bp)
Overview 1 RT 1: 30985-34491 bp Neighborhood of RT #1 [30985, 34559] HNHc RVT-GII GIIM YjcR Feature: gene Location: 30985-31407 bp Ori: ARJ26009.1 Feature: domain Description: HNHc Note: nucleases Location: 31060-31180 bp Feature: domain Description: HNHc Note: nucleases Location: 3 1060-3 1180 bp Feature: gene Location: 31665-31928 bp Feature: gene Location: 31950-33248 bp Ori: ARJ26010.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32256-32886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2256-3 2886 bp Feature: domain Description: GIIM Note: maturase Location: 32967-33192 bp Feature: domain Description: GIIM Note: maturase Location: 3 2967-3 3 192 bp Feature: gene Location: 33531-33710 bp Feature: gene Location: 33732-34559 bp Ori: ARJ26012.1 Feature: domain Description: YjcR Location: 33735-34491 bp Feature: domain Description: YjcR Location: 3 3 73 5-3 4491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, GIIM (pfam08388), YjcR (COG5484)

Seq: CP020743.1 Bacillus mycoides strain Gnyt1 chromosome, complete genome (5597907 bp)
Overview 1 RT 1: 1096916-1101296 bp 2 RT 2: 2310897-2314591 bp 3 RT 3: 3238184-3242070 bp 4 RT 4: 3451520-3455638 bp 5 RT 5: 3507072-3511710 bp 6 RT 6: 3615582-3625779 bp 7 RT 7: 4888337-4891603 bp Neighborhood of RT #1 [1096916, 1101460] PcpA_C_like PcpA_C_like RVT-GII GIIM RapH_N TPR TPR Phr_nterm Neighborhood of RT #2 [2310897, 2314591] Nitro_FMN_reductase RVT-GII GIIM Neighborhood of RT #3 [3238184, 3242075] Methyltransf_11 RVT-GII GIIM PRK03910 Neighborhood of RT #4 [3451520, 3455638] PGRP YgiM Phage_holin_4_1 RVT-GII GIIM Neighborhood of RT #5 [3507072, 3511710] HK_WalK PRK11360 OmpR RVT-GII GIIM Neighborhood of RT #6 [3615582, 3626099] ASCH_PF0470_like LbH_XAT RVT-GII GIIM B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat Neighborhood of RT #7 [4888337, 4892373] COG4824 XhlA RVT-GII GIIM BppU_N Feature: gene Location: 1096916-1097893 bp Ori: ARJ20762.1 Feature: domain Description: PcpA_C_like Location: 1096934-1097249 bp Feature: domain Description: PcpA_C_like Location: 1096934 -109724 9 bp Feature: domain Description: PcpA_C_like Location: 1097387-1097852 bp Feature: domain Description: PcpA_C_like Location: 1097387-1097852 bp Feature: gene Location: 1098197-1098460 bp Feature: gene Location: 1098482-1099780 bp Ori: ARJ20763.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098788-1099418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098788-10994 18 bp Feature: domain Description: GIIM Note: maturase Location: 1099499-1099724 bp Feature: domain Description: GIIM Note: maturase Location: 10994 99-1099724 bp Feature: gene Location: 1100118-1101212 bp Ori: ARJ20764.1 Feature: domain Description: RapH_N Location: 1100133-1100316 bp Feature: domain Description: RapH_N Location: 1100133-1100316 bp Feature: domain Description: TPR Location: 1100400-1100715 bp Feature: domain Description: TPR Location: 11004 00-1100715 bp Feature: domain Description: TPR Location: 1100766-1100940 bp Feature: domain Description: TPR Location: 1100766-110094 0 bp Feature: gene Location: 1101212-1101460 bp Ori: ARJ20765.1 Feature: domain Description: Phr_nterm Location: 1101215-1101296 bp Feature: domain Description: Phr_nterm Location: 1101215-1101296 bp Feature: gene Location: 2310897-2311544 bp Ori: ARJ21952.1 Feature: domain Description: Nitro_FMN_reductase Location: 2310930-2311476 bp Feature: domain Description: Nitro_FMN_reductase Location: 2310930-23114 76 bp Feature: gene Location: 2311824-2312087 bp Feature: gene Location: 2312109-2313407 bp Ori: ARJ21953.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2312415-2313045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23124 15-231304 5 bp Feature: domain Description: GIIM Note: maturase Location: 2313126-2313351 bp Feature: domain Description: GIIM Note: maturase Location: 2313126-2313351 bp Feature: gene Location: 2313773-2314261 bp Feature: gene Location: 2314409-2314591 bp Feature: gene Location: 3238184-3238507 bp Feature: gene Location: 3238845-3239474 bp Ori: ARJ22776.1 Feature: domain Description: Methyltransf_11 Location: 3238971-3239244 bp Feature: domain Description: Methyltransf_11 Location: 3238971-323924 4 bp Feature: gene Location: 3239717-3241015 bp Ori: ARJ22777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3240023-3240653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324 0023-324 0653 bp Feature: domain Description: GIIM Note: maturase Location: 3240734-3240959 bp Feature: domain Description: GIIM Note: maturase Location: 324 0734 -324 0959 bp Feature: gene Location: 3241037-3241300 bp Feature: gene Location: 3241572-3242075 bp Ori: ARJ22778.1 Feature: domain Description: PRK03910 Location: 3241575-3242070 bp Feature: domain Description: PRK03910 Location: 324 1575-324 2070 bp Feature: gene Location: 3451520-3452566 bp Ori: ARJ22962.1 Feature: domain Description: PGRP Location: 3451667-3452024 bp Feature: domain Description: PGRP Location: 34 51667-34 52024 bp Feature: domain Description: YgiM Location: 3452162-3452276 bp Feature: domain Description: YgiM Location: 34 52162-34 52276 bp Feature: gene Location: 3452659-3453147 bp Ori: ARJ22963.1 Feature: domain Description: Phage_holin_4_1 Location: 3452773-3453088 bp Feature: domain Description: Phage_holin_4 _1 Location: 34 52773-34 53088 bp Feature: gene Location: 3453328-3454626 bp Ori: ARJ22964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3453634-3454264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 53634 -34 54 264 bp Feature: domain Description: GIIM Note: maturase Location: 3454345-3454570 bp Feature: domain Description: GIIM Note: maturase Location: 34 54 34 5-34 54 570 bp Feature: gene Location: 3454648-3454911 bp Feature: gene Location: 3455180-3455638 bp Feature: gene Location: 3507072-3508439 bp Ori: ARJ23011.1 Feature: domain Description: HK_WalK Location: 3507528-3507750 bp Feature: domain Description: HK_WalK Location: 3507528-3507750 bp Feature: domain Description: PRK11360 Location: 3507771-3508428 bp Feature: domain Description: PRK11360 Location: 3507771-35084 28 bp Feature: gene Location: 3508436-3509110 bp Ori: ARJ23012.1 Feature: domain Description: OmpR Location: 3508445-3509099 bp Feature: domain Description: OmpR Location: 35084 4 5-3509099 bp Feature: gene Location: 3509613-3510917 bp Ori: ARJ23013.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3509898-3510537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3509898-3510537 bp Feature: domain Description: GIIM Note: maturase Location: 3510612-3510837 bp Feature: domain Description: GIIM Note: maturase Location: 3510612-3510837 bp Feature: gene Location: 3511091-3511270 bp Feature: gene Location: 3511422-3511710 bp Feature: gene Location: 3615582-3615923 bp Ori: ARJ23118.1 Feature: domain Description: ASCH_PF0470_like Location: 3615591-3615915 bp Feature: domain Description: ASCH_PF04 70_like Location: 3615591-3615915 bp Feature: gene Location: 3616063-3616620 bp Ori: ARJ23119.1 Feature: domain Description: LbH_XAT Location: 3616102-3616534 bp Feature: domain Description: LbH_XAT Location: 3616102-3616534 bp Feature: gene Location: 3616773-3618071 bp Ori: ARJ23120.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3617079-3617709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3617079-3617709 bp Feature: domain Description: GIIM Note: maturase Location: 3617790-3618015 bp Feature: domain Description: GIIM Note: maturase Location: 3617790-3618015 bp Feature: gene Location: 3618093-3618356 bp Feature: gene Location: 3618636-3626099 bp Ori: ARJ23121.1 Feature: domain Description: B_ant_repeat Location: 3619677-3619833 bp Feature: domain Description: B_ant_repeat Location: 3619677-3619833 bp Feature: domain Description: B_ant_repeat Location: 3620073-3620229 bp Feature: domain Description: B_ant_repeat Location: 3620073-3620229 bp Feature: domain Description: B_ant_repeat Location: 3620469-3620625 bp Feature: domain Description: B_ant_repeat Location: 36204 69-3620625 bp Feature: domain Description: B_ant_repeat Location: 3620865-3621021 bp Feature: domain Description: B_ant_repeat Location: 3620865-3621021 bp Feature: domain Description: B_ant_repeat Location: 3621261-3621417 bp Feature: domain Description: B_ant_repeat Location: 3621261-36214 17 bp Feature: domain Description: B_ant_repeat Location: 3621657-3621810 bp Feature: domain Description: B_ant_repeat Location: 3621657-3621810 bp Feature: domain Description: B_ant_repeat Location: 3622053-3622209 bp Feature: domain Description: B_ant_repeat Location: 3622053-3622209 bp Feature: domain Description: B_ant_repeat Location: 3622440-3622593 bp Feature: domain Description: B_ant_repeat Location: 36224 4 0-3622593 bp Feature: domain Description: B_ant_repeat Location: 3622845-3623001 bp Feature: domain Description: B_ant_repeat Location: 362284 5-3623001 bp Feature: domain Description: B_ant_repeat Location: 3623244-3623400 bp Feature: domain Description: B_ant_repeat Location: 362324 4 -36234 00 bp Feature: domain Description: B_ant_repeat Location: 3623640-3623796 bp Feature: domain Description: B_ant_repeat Location: 362364 0-3623796 bp Feature: domain Description: B_ant_repeat Location: 3624036-3624189 bp Feature: domain Description: B_ant_repeat Location: 3624 036-3624 189 bp Feature: domain Description: B_ant_repeat Location: 3624432-3624588 bp Feature: domain Description: B_ant_repeat Location: 3624 4 32-3624 588 bp Feature: domain Description: B_ant_repeat Location: 3624828-3624984 bp Feature: domain Description: B_ant_repeat Location: 3624 828-3624 984 bp Feature: domain Description: B_ant_repeat Location: 3625224-3625377 bp Feature: domain Description: B_ant_repeat Location: 3625224 -3625377 bp Feature: domain Description: B_ant_repeat Location: 3625626-3625779 bp Feature: domain Description: B_ant_repeat Location: 3625626-3625779 bp Feature: gene Location: 4888337-4888762 bp Ori: ARJ24383.1 Feature: domain Description: COG4824 Location: 4888352-4888742 bp Feature: domain Description: COG4 824 Location: 4 888352-4 88874 2 bp Feature: gene Location: 4888840-4889064 bp Ori: ARJ24384.1 Feature: domain Description: XhlA Location: 4888858-4889047 bp Feature: domain Description: XhlA Location: 4 888858-4 88904 7 bp Feature: gene Location: 4889327-4890625 bp Ori: ARJ24385.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4889633-4890263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 889633-4 890263 bp Feature: domain Description: GIIM Note: maturase Location: 4890344-4890569 bp Feature: domain Description: GIIM Note: maturase Location: 4 89034 4 -4 890569 bp Feature: gene Location: 4890647-4890910 bp Feature: gene Location: 4891186-4892373 bp Ori: ARJ24386.1 Feature: domain Description: BppU_N Location: 4891222-4891603 bp Feature: domain Description: BppU_N Location: 4 891222-4 891603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PcpA_C_like (cd08347), RVT-GII, GIIM (pfam08388), RapH_N (pfam18801), TPR (smart00028), Phr_nterm (TIGR04429), Nitro_FMN_reductase (cl00514), Methyltransf_11 (pfam08241), PRK03910 (D-cysteine desulfhydrase; Validated), PGRP (smart00701)
YgiM (COG3103), Phage_holin_4_1 (pfam05105), HK_WalK (NF033092), PRK11360 (two-component system sensor histidine kinase AtoS), OmpR (COG0745), ASCH_PF0470_like (cd06555), LbH_XAT (cd03349), B_ant_repeat (TIGR01451), COG4824 (Phage-related holin (Lysis protein) ), XhlA (pfam10779)
BppU_N