myRT

myRT report for GCA_002113845.3_ASM211384v3

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Seq: CP020895.2 Legionella longbeachae strain F1157CHC plasmid pLLO-F1157CHC, complete sequence (108267 bp)
Overview 1 RT 1: 4575-9835 bp Neighborhood of RT #1 [4575, 9849] SidC_N RVT-UG18 DDE_Tnp_1_3 COG3547 Feature: gene Location: 4575-6981 bp Feature: domain Description: SidC_N Location: 4587-5967 bp Feature: domain Description: SidC_N Location: 4587-5967 bp Feature: gene Location: 6914-7288 bp Feature: gene Location: 7248-8147 bp Ori: ARM35484.2 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 7446-8028 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 7446-8028 bp Feature: gene Location: 8288-9181 bp Ori: ARM35485.2 Feature: domain Description: DDE_Tnp_1_3 Location: 8615-9065 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 861 5-9065 bp Feature: gene Location: 9214-9849 bp Ori: ARM35486.2 Feature: domain Description: COG3547 Location: 9232-9835 bp Feature: domain Description: COG3547 Location: 9232-9835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SidC_N (pfam18219), RVT-UG18, DDE_Tnp_1_3 (pfam13612), COG3547 (Transposase )

Seq: CP020894.3 Legionella longbeachae strain F1157CHC chromosome, complete genome (4142881 bp)
Overview 1 RT 1: 1642936-1646503 bp 2 RT 2: 2551305-2555087 bp 3 RT 3: 3207958-3212653 bp 4 RT 4: 4056898-4063842 bp Neighborhood of RT #1 [1642936, 1646503] HTH_Tnp_1 RVT-UG18 Neighborhood of RT #2 [2551305, 2555134] RVT-UG18 RND_mfp HlyD_3 PRK11556 Neighborhood of RT #3 [3207958, 3213672] Mod DDE_Tnp_1_3 RVT-UG18 SidC_N Neighborhood of RT #4 [4056898, 4063842] PRK10060 RVT-UNC CAP_ED CPBP Feature: gene Location: 1642936-1644044 bp Feature: domain Description: HTH_Tnp_1 Location: 1642942-1643149 bp Feature: domain Description: HTH_Tnp_1 Location: 1642 942 -1643149 bp Feature: gene Location: 1644120-1644647 bp Feature: gene Location: 1644729-1645190 bp Ori: ARM32098.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 1644951-1645167 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 1644951-1645167 bp Feature: gene Location: 1645310-1645588 bp Feature: gene Location: 1645539-1646503 bp Feature: gene Location: 2551305-2552261 bp Feature: gene Location: 2552212-2552490 bp Feature: gene Location: 2552639-2553070 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2552861-2553071 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2 552 861-2 553071 bp Feature: gene Location: 2553570-2553752 bp Feature: gene Location: 2553932-2555134 bp Ori: ARM32843.1 Feature: domain Description: RND_mfp Location: 2554040-2554541 bp Feature: domain Description: RND_mfp Location: 2 554040-2 554541 bp Feature: domain Description: HlyD_3 Location: 2554556-2554844 bp Feature: domain Description: HlyD_3 Location: 2 554556-2 554844 bp Feature: domain Description: PRK11556 Location: 2554895-2555087 bp Feature: domain Description: PRK11556 Location: 2 554895-2 555087 bp Feature: gene Location: 3207958-3209025 bp Ori: ARM33360.1 Feature: domain Description: Mod Location: 3207982-3208615 bp Feature: domain Description: Mod Location: 32 07982 -32 08615 bp Feature: gene Location: 3209061-3209954 bp Ori: ARM33361.1 Feature: domain Description: DDE_Tnp_1_3 Location: 3209388-3209838 bp Feature: domain Description: DDE_Tnp_1_3 Location: 32 09388-32 09838 bp Feature: gene Location: 3210095-3210994 bp Ori: ARM33362.2 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 3210293-3210875 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 32 102 93-32 10875 bp Feature: gene Location: 3210954-3211328 bp Feature: gene Location: 3211261-3213672 bp Ori: ARM33364.1 Feature: domain Description: SidC_N Location: 3211273-3212653 bp Feature: domain Description: SidC_N Location: 32 112 73-32 12 653 bp Feature: gene Location: 4056898-4058544 bp Ori: ARM34029.1 Feature: domain Description: PRK10060 Location: 4057222-4058515 bp Feature: domain Description: PRK10060 Location: 40572 2 2 -4058515 bp Feature: gene Location: 4058570-4058980 bp Feature: gene Location: 4059297-4060682 bp Ori: ARM35413.3 Feature: RT Description: RVT-UNC Note: UNC RT Location: 4059534-4060170 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4059534-4060170 bp Feature: gene Location: 4060657-4061769 bp Ori: ARM34031.1 Feature: domain Description: CAP_ED Location: 4060696-4060996 bp Feature: domain Description: CAP_ED Location: 4060696-4060996 bp Feature: domain Description: CPBP Location: 4061476-4061722 bp Feature: domain Description: CPBP Location: 4061476-406172 2 bp Feature: gene Location: 4061782-4063842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-UG18, RND_mfp (TIGR01730), HlyD_3 (pfam13437), PRK11556 (MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit), Mod (COG2189), DDE_Tnp_1_3 (pfam13612), SidC_N (pfam18219), PRK10060 (cyclic di-GMP phosphodiesterase), RVT-DGRs/RVT-UG26/RVT-CRISPR/RVT-UG27(RVT-UNC)
CAP_ED (cl00047), CPBP