myRT

myRT report for GCA_002117005.1_ASM211700v1

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Seq: CP021023.1 Sedimentisphaera salicampi strain ST-PulAB-D4 chromosome, complete genome (3192293 bp)
Overview 1 RT 1: 938326-944425 bp 2 RT 2: 1680204-1686899 bp 3 RT 3: 2114449-2117613 bp 4 RT 4: 2330128-2334803 bp 5 RT 5: 2869481-2875102 bp Neighborhood of RT #1 [938326, 944425] SGSH BglX RVT-GII GIIM Neighborhood of RT #2 [1680204, 1686913] Dockerin_II HsdM_N RVT-UG5 degP_htrA_DO PRK13222 Neighborhood of RT #3 [2114449, 2117627] RVT-GII InsE PHA02517 Neighborhood of RT #4 [2330128, 2334901] RVT-GII PulG sulfatase_like Neighborhood of RT #5 [2869481, 2875215] PEP-CTERM RVT-GII PMT_2 Methyltransf_23 Feature: gene Location: 938326-939807 bp Ori: ARN56315.1 Gene: atsA_13 Feature: domain Description: SGSH Location: 938467-939694 bp Feature: domain Description: SGSH Location: 938467-939694 bp Feature: gene Location: 939966-941081 bp Ori: ARN56316.1 Feature: domain Description: BglX Location: 940056-941076 bp Feature: domain Description: BglX Location: 940056-941 076 bp Feature: gene Location: 941387-942775 bp Ori: ARN56317.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941708-942323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 708-942323 bp Feature: domain Description: GIIM Note: maturase Location: 942374-942599 bp Feature: domain Description: GIIM Note: maturase Location: 942374-942599 bp Feature: gene Location: 943483-944106 bp Feature: gene Location: 944048-944425 bp Feature: gene Location: 1680204-1680797 bp Ori: ARN56865.1 Feature: domain Description: Dockerin_II Location: 1680645-1680789 bp Feature: domain Description: Dockerin_II Location: 1 680645-1 680789 bp Feature: gene Location: 1681298-1681567 bp Ori: ARN56866.1 Feature: domain Description: HsdM_N Location: 1681325-1681511 bp Feature: domain Description: HsdM_N Location: 1 681 325-1 681 51 1 bp Feature: gene Location: 1681624-1684524 bp Ori: ARN56867.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1682095-1682653 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 682095-1 682653 bp Feature: gene Location: 1684695-1686092 bp Ori: ARN56868.1 Gene: mucD_2 Feature: domain Description: degP_htrA_DO Location: 1684785-1685997 bp Feature: domain Description: degP_htrA_DO Location: 1 684785-1 685997 bp Feature: gene Location: 1686248-1686913 bp Ori: ARN56869.1 Gene: gph Feature: domain Description: PRK13222 Location: 1686254-1686899 bp Feature: domain Description: PRK1 3222 Location: 1 686254-1 686899 bp Feature: gene Location: 2114449-2114556 bp Feature: gene Location: 2114556-2114930 bp Feature: gene Location: 2114933-2116264 bp Ori: ARN57182.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2115212-2115899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 521 2-21 1 5899 bp Feature: gene Location: 2116387-2116812 bp Ori: ARN57183.1 Feature: domain Description: InsE Location: 2116420-2116660 bp Feature: domain Description: InsE Location: 21 1 6420-21 1 6660 bp Feature: gene Location: 2116911-2117627 bp Ori: ARN57184.1 Feature: domain Description: PHA02517 Location: 2116983-2117613 bp Feature: domain Description: PHA0251 7 Location: 21 1 6983-21 1 761 3 bp Feature: gene Location: 2330128-2330235 bp Feature: gene Location: 2330235-2330609 bp Feature: gene Location: 2330612-2331943 bp Ori: ARN57350.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2330891-2331578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2330891 -2331 578 bp Feature: gene Location: 2332066-2332926 bp Ori: ARN57351.1 Gene: xcpT_7 Feature: domain Description: PulG Location: 2332075-2332351 bp Feature: domain Description: PulG Location: 2332075-2332351 bp Feature: gene Location: 2333483-2334901 bp Ori: ARN57352.1 Gene: betC_3 Feature: domain Description: sulfatase_like Location: 2333603-2334803 bp Feature: domain Description: sulfatase_like Location: 2333603-2334803 bp Feature: gene Location: 2869481-2870101 bp Ori: ARN57774.1 Feature: domain Description: PEP-CTERM Location: 2870036-2870096 bp Feature: domain Description: PEP-CTERM Location: 2870036-2870096 bp Feature: gene Location: 2870616-2870990 bp Feature: gene Location: 2870993-2872324 bp Ori: ARN57776.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871272-2871959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871 272-2871 959 bp Feature: gene Location: 2872447-2874357 bp Ori: ARN57777.1 Feature: domain Description: PMT_2 Location: 2872684-2873149 bp Feature: domain Description: PMT_2 Location: 2872684-28731 49 bp Feature: gene Location: 2874424-2875215 bp Ori: ARN57778.1 Gene: ycgJ Feature: domain Description: Methyltransf_23 Location: 2874568-2875102 bp Feature: domain Description: Methyltransf_23 Location: 2874568-28751 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SGSH (cd16027), BglX (COG1472), RVT-GII, GIIM (pfam08388), Dockerin_II (cd14254), HsdM_N (pfam12161), RVT-UG5, degP_htrA_DO (TIGR02037), PRK13222 (N-acetylmuramic acid 6-phosphate phosphatase MupP), InsE (COG2963)
PHA02517 (putative transposase OrfB; Reviewed), PulG (pfam11773), sulfatase_like (cd16156), PEP-CTERM, PMT_2 (pfam13231), Methyltransf_23 (pfam13489)