myRT

myRT report for GCA_002117245.1_ASM211724v1

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Seq: CP017354.1 Lactobacillus plantarum strain TMW 1.25 chromosome, complete genome (3144834 bp)
Overview 1 RT 1: 17454-26032 bp 2 RT 2: 507687-511947 bp 3 RT 3: 1168157-1172624 bp 4 RT 4: 1234077-1241032 bp 5 RT 5: 1299485-1304578 bp 6 RT 6: 1693736-1698946 bp 7 RT 7: 2025377-2031825 bp 8 RT 8: 2166129-2171265 bp 9 RT 9: 2418712-2428223 bp 10 RT 10: 2535840-2543738 bp 11 RT 11: 2764279-2768670 bp 12 RT 12: 2867991-2872588 bp 13 RT 13: 2905156-2911827 bp Neighborhood of RT #1 [17454, 26040] proA PBP2_OppA RVT-GII GIIM PRK12313 glgC Neighborhood of RT #2 [507687, 512030] RVT-GII GIIM PTR2 acc_ester Neighborhood of RT #3 [1168157, 1172644] LytT RVT-GII GIIM YdiL Neighborhood of RT #4 [1234077, 1241079] COG4932 COG4932 RVT-GII GIIM P-type_ATPase_H eno Neighborhood of RT #5 [1299485, 1304619] RplT RVT-GII GIIM DDE_Tnp_1 PRK13342 Neighborhood of RT #6 [1693736, 1698951] HTH_MARR YczE RVT-GII GIIM ABC_BcrA_bacitracin_resist NosY Neighborhood of RT #7 [2025377, 2031842] PRX_Atyp2cys PRK02471 RVT-GII GIIM PRK01565 NifS Neighborhood of RT #8 [2166129, 2171345] RVT-GII GIIM MdlB GT4_GtfA-like Neighborhood of RT #9 [2418712, 2428246] KxYKxGKxW DUF285 DUF285 Big_3 Big_3 Big_3 Big_3 KxYKxGKxW DUF285 DUF285 Big_3 Big_3 Big_3 RVT-GII GIIM DHQase_I Neighborhood of RT #10 [2535840, 2543752] DUF2207 UvrA UvrA RVT-GII GIIM UvrA MFS_MefA_like Neighborhood of RT #11 [2764279, 2768690] RVT-GII GIIM TauE AzlD Neighborhood of RT #12 [2867991, 2872605] FolK FolB RVT-GII GIIM Colicin_V TroA_b Neighborhood of RT #13 [2905156, 2911829] antiport_nhaC RVT-GII GIIM AnsP DUF915 Feature: gene Location: 17454-18692 bp Ori: ARN99474.1 Feature: domain Description: proA Location: 17463-18687 bp Feature: domain Description: proA Location: 1 7463-1 8687 bp Feature: gene Location: 19153-20769 bp Ori: ARN99475.1 Feature: domain Description: PBP2_OppA Location: 19246-20758 bp Feature: domain Description: PBP2_OppA Location: 1 9246-20758 bp Feature: gene Location: 21341-22681 bp Ori: ARO02006.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21617-22235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 61 7-22235 bp Feature: domain Description: GIIM Note: maturase Location: 22289-22508 bp Feature: domain Description: GIIM Note: maturase Location: 22289-22508 bp Feature: gene Location: 23007-24911 bp Ori: ARN99476.1 Feature: domain Description: PRK12313 Location: 23022-24882 bp Feature: domain Description: PRK1 231 3 Location: 23022-24882 bp Feature: gene Location: 24901-26040 bp Ori: ARN99477.1 Feature: domain Description: glgC Location: 24910-26032 bp Feature: domain Description: glgC Location: 2491 0-26032 bp Feature: gene Location: 507687-509027 bp Ori: ARO02033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507963-508581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507963-508581 bp Feature: domain Description: GIIM Note: maturase Location: 508635-508854 bp Feature: domain Description: GIIM Note: maturase Location: 508635-508854 bp Feature: gene Location: 509661-511133 bp Ori: ARN99877.1 Feature: domain Description: PTR2 Location: 509673-511125 bp Feature: domain Description: PTR2 Location: 509673-51 1 1 25 bp Feature: gene Location: 511188-512030 bp Ori: ARN99878.1 Feature: domain Description: acc_ester Location: 511212-511947 bp Feature: domain Description: acc_ester Location: 51 1 21 2-51 1 947 bp Feature: gene Location: 1168157-1168924 bp Feature: domain Description: LytT Location: 1168163-1168847 bp Feature: domain Description: LytT Location: 1 1 681 63-1 1 68847 bp Feature: gene Location: 1169092-1169430 bp Feature: gene Location: 1169948-1171288 bp Ori: ARO02081.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1170224-1170842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 70224-1 1 70842 bp Feature: domain Description: GIIM Note: maturase Location: 1170896-1171115 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 70896-1 1 71 1 1 5 bp Feature: gene Location: 1171548-1171919 bp Feature: gene Location: 1171958-1172644 bp Feature: domain Description: YdiL Location: 1172012-1172624 bp Feature: domain Description: YdiL Location: 1 1 7201 2-1 1 72624 bp Feature: gene Location: 1234077-1235051 bp Ori: ARO00443.1 Feature: domain Description: COG4932 Location: 1234125-1234428 bp Feature: domain Description: COG4932 Location: 1 2341 25-1 234428 bp Feature: domain Description: COG4932 Location: 1234485-1235046 bp Feature: domain Description: COG4932 Location: 1 234485-1 235046 bp Feature: gene Location: 1235155-1235364 bp Feature: gene Location: 1235900-1237195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236356-1236761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 236356-1 236761 bp Feature: domain Description: GIIM Note: maturase Location: 1236815-1237034 bp Feature: domain Description: GIIM Note: maturase Location: 1 23681 5-1 237034 bp Feature: gene Location: 1237477-1239750 bp Ori: ARO00445.1 Feature: domain Description: P-type_ATPase_H Location: 1237507-1239715 bp Feature: domain Description: P-type_ATPase_H Location: 1 237507-1 23971 5 bp Feature: gene Location: 1239790-1241079 bp Ori: ARO00446.1 Feature: domain Description: eno Location: 1239802-1241032 bp Feature: domain Description: eno Location: 1 239802-1 241 032 bp Feature: gene Location: 1299485-1299841 bp Ori: ARO00493.1 Feature: domain Description: RplT Location: 1299488-1299836 bp Feature: domain Description: RplT Location: 1 299488-1 299836 bp Feature: gene Location: 1300084-1300395 bp Feature: gene Location: 1300939-1302279 bp Ori: ARO02085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301215-1301833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 301 21 5-1 301 833 bp Feature: domain Description: GIIM Note: maturase Location: 1301887-1302106 bp Feature: domain Description: GIIM Note: maturase Location: 1 301 887-1 3021 06 bp Feature: gene Location: 1302627-1303130 bp Ori: ARO00495.1 Feature: domain Description: DDE_Tnp_1 Location: 1302657-1303107 bp Feature: domain Description: DDE_Tnp_1 Location: 1 302657-1 3031 07 bp Feature: gene Location: 1303456-1304619 bp Ori: ARO00496.1 Feature: domain Description: PRK13342 Location: 1303474-1304578 bp Feature: domain Description: PRK1 3342 Location: 1 303474-1 304578 bp Feature: gene Location: 1693736-1694170 bp Ori: ARO02118.1 Feature: domain Description: HTH_MARR Location: 1693814-1694087 bp Feature: domain Description: HTH_MARR Location: 1 69381 4-1 694087 bp Feature: gene Location: 1694167-1694835 bp Ori: ARO00815.1 Feature: domain Description: YczE Location: 1694188-1694806 bp Feature: domain Description: YczE Location: 1 6941 88-1 694806 bp Feature: gene Location: 1694932-1696272 bp Ori: ARO02119.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1695208-1695826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 695208-1 695826 bp Feature: domain Description: GIIM Note: maturase Location: 1695880-1696099 bp Feature: domain Description: GIIM Note: maturase Location: 1 695880-1 696099 bp Feature: gene Location: 1697286-1698185 bp Ori: ARO00816.1 Feature: domain Description: ABC_BcrA_bacitracin_resist Location: 1697304-1697919 bp Feature: domain Description: ABC_BcrA_bacitracin_resist Location: 1 697304-1 69791 9 bp Feature: gene Location: 1698199-1698951 bp Ori: ARO00817.1 Feature: domain Description: NosY Location: 1698202-1698946 bp Feature: domain Description: NosY Location: 1 698202-1 698946 bp Feature: gene Location: 2025377-2025985 bp Ori: ARO02139.1 Feature: domain Description: PRX_Atyp2cys Location: 2025548-2025965 bp Feature: domain Description: PRX_Atyp2cys Location: 2025548-2025965 bp Feature: gene Location: 2026111-2027349 bp Ori: ARO01081.1 Feature: domain Description: PRK02471 Location: 2026123-2027320 bp Feature: domain Description: PRK02471 Location: 20261 23-2027320 bp Feature: gene Location: 2027562-2028902 bp Ori: ARO02140.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2027838-2028456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2027838-2028456 bp Feature: domain Description: GIIM Note: maturase Location: 2028510-2028729 bp Feature: domain Description: GIIM Note: maturase Location: 202851 0-2028729 bp Feature: gene Location: 2029453-2030670 bp Ori: ARO01082.1 Feature: domain Description: PRK01565 Location: 2029459-2030620 bp Feature: domain Description: PRK01 565 Location: 2029459-2030620 bp Feature: gene Location: 2030688-2031842 bp Ori: ARO01083.1 Feature: domain Description: NifS Location: 2030691-2031825 bp Feature: domain Description: NifS Location: 2030691 -2031 825 bp Feature: gene Location: 2166129-2167469 bp Ori: ARO02150.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2166405-2167023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 66405-21 67023 bp Feature: domain Description: GIIM Note: maturase Location: 2167077-2167296 bp Feature: domain Description: GIIM Note: maturase Location: 21 67077-21 67296 bp Feature: gene Location: 2168033-2169796 bp Ori: ARO01216.1 Feature: domain Description: MdlB Location: 2168096-2169785 bp Feature: domain Description: MdlB Location: 21 68096-21 69785 bp Feature: gene Location: 2169768-2171345 bp Ori: ARO01217.1 Feature: domain Description: GT4_GtfA-like Location: 2169774-2171265 bp Feature: domain Description: GT4_GtfA-like Location: 21 69774-21 71 265 bp Feature: gene Location: 2418712-2421831 bp Ori: ARO01423.1 Feature: domain Description: KxYKxGKxW Location: 2418727-2418793 bp Feature: domain Description: KxYKxGKxW Location: 241 8727-241 8793 bp Feature: domain Description: DUF285 Location: 2419549-2419876 bp Feature: domain Description: DUF285 Location: 241 9549-241 9876 bp Feature: domain Description: DUF285 Location: 2419894-2420131 bp Feature: domain Description: DUF285 Location: 241 9894-24201 31 bp Feature: domain Description: Big_3 Location: 2420350-2420563 bp Feature: domain Description: Big_3 Location: 2420350-2420563 bp Feature: domain Description: Big_3 Location: 2420593-2420788 bp Feature: domain Description: Big_3 Location: 2420593-2420788 bp Feature: domain Description: Big_3 Location: 2420863-2421040 bp Feature: domain Description: Big_3 Location: 2420863-2421 040 bp Feature: domain Description: Big_3 Location: 2421088-2421295 bp Feature: domain Description: Big_3 Location: 2421 088-2421 295 bp Feature: gene Location: 2421854-2424871 bp Ori: ARO01424.1 Feature: domain Description: KxYKxGKxW Location: 2421935-2421998 bp Feature: domain Description: KxYKxGKxW Location: 2421 935-2421 998 bp Feature: domain Description: DUF285 Location: 2422742-2423009 bp Feature: domain Description: DUF285 Location: 2422742-2423009 bp Feature: domain Description: DUF285 Location: 2423114-2423339 bp Feature: domain Description: DUF285 Location: 24231 1 4-2423339 bp Feature: domain Description: Big_3 Location: 2423567-2423786 bp Feature: domain Description: Big_3 Location: 2423567-2423786 bp Feature: domain Description: Big_3 Location: 2423867-2424041 bp Feature: domain Description: Big_3 Location: 2423867-2424041 bp Feature: domain Description: Big_3 Location: 2424086-2424293 bp Feature: domain Description: Big_3 Location: 2424086-2424293 bp Feature: gene Location: 2425285-2426625 bp Ori: ARO02163.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425561-2426179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425561 -24261 79 bp Feature: domain Description: GIIM Note: maturase Location: 2426233-2426452 bp Feature: domain Description: GIIM Note: maturase Location: 2426233-2426452 bp Feature: gene Location: 2427246-2427467 bp Feature: gene Location: 2427473-2428246 bp Ori: ARO01426.1 Feature: domain Description: DHQase_I Location: 2427551-2428223 bp Feature: domain Description: DHQase_I Location: 2427551 -2428223 bp Feature: gene Location: 2535840-2537672 bp Ori: ARO01514.1 Feature: domain Description: DUF2207 Location: 2535942-2537445 bp Feature: domain Description: DUF2207 Location: 2535942-2537445 bp Feature: gene Location: 2537816-2539072 bp Feature: domain Description: UvrA Location: 2537843-2538209 bp Feature: domain Description: UvrA Location: 2537843-2538209 bp Feature: domain Description: UvrA Location: 2538251-2539064 bp Feature: domain Description: UvrA Location: 2538251 -2539064 bp Feature: gene Location: 2539158-2540498 bp Ori: ARO02171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2539434-2540052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2539434-2540052 bp Feature: domain Description: GIIM Note: maturase Location: 2540106-2540325 bp Feature: domain Description: GIIM Note: maturase Location: 25401 06-2540325 bp Feature: gene Location: 2540962-2542230 bp Feature: domain Description: UvrA Location: 2540986-2542213 bp Feature: domain Description: UvrA Location: 2540986-254221 3 bp Feature: gene Location: 2542538-2543752 bp Ori: ARO01515.1 Feature: domain Description: MFS_MefA_like Location: 2542580-2543738 bp Feature: domain Description: MFS_MefA_like Location: 2542580-2543738 bp Feature: gene Location: 2764279-2764710 bp Feature: gene Location: 2764820-2765179 bp Feature: gene Location: 2765665-2767005 bp Ori: ARO02180.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2765941-2766559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2765941 -2766559 bp Feature: domain Description: GIIM Note: maturase Location: 2766613-2766832 bp Feature: domain Description: GIIM Note: maturase Location: 276661 3-2766832 bp Feature: gene Location: 2767559-2768280 bp Feature: domain Description: TauE Location: 2767580-2768024 bp Feature: domain Description: TauE Location: 2767580-2768024 bp Feature: gene Location: 2768340-2768690 bp Ori: ARO01698.1 Feature: domain Description: AzlD Location: 2768379-2768670 bp Feature: domain Description: AzlD Location: 2768379-2768670 bp Feature: gene Location: 2867991-2868503 bp Ori: ARO01778.1 Feature: domain Description: FolK Location: 2868009-2868459 bp Feature: domain Description: FolK Location: 2868009-2868459 bp Feature: gene Location: 2868493-2868861 bp Ori: ARO01779.1 Feature: domain Description: FolB Location: 2868502-2868841 bp Feature: domain Description: FolB Location: 2868502-2868841 bp Feature: gene Location: 2869092-2870432 bp Ori: ARO02192.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2869368-2869986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2869368-2869986 bp Feature: domain Description: GIIM Note: maturase Location: 2870040-2870259 bp Feature: domain Description: GIIM Note: maturase Location: 2870040-2870259 bp Feature: gene Location: 2870993-2871526 bp Ori: ARO01780.1 Feature: domain Description: Colicin_V Location: 2871002-2871461 bp Feature: domain Description: Colicin_V Location: 2871 002-2871 461 bp Feature: gene Location: 2871697-2872605 bp Ori: ARO01781.1 Feature: domain Description: TroA_b Location: 2871805-2872588 bp Feature: domain Description: TroA_b Location: 2871 805-2872588 bp Feature: gene Location: 2905156-2905461 bp Feature: gene Location: 2905500-2906924 bp Ori: ARO01805.1 Feature: domain Description: antiport_nhaC Location: 2905533-2906871 bp Feature: domain Description: antiport_nhaC Location: 2905533-2906871 bp Feature: gene Location: 2907122-2908462 bp Ori: ARO02193.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2907398-2908016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2907398-290801 6 bp Feature: domain Description: GIIM Note: maturase Location: 2908070-2908289 bp Feature: domain Description: GIIM Note: maturase Location: 2908070-2908289 bp Feature: gene Location: 2909266-2910648 bp Ori: ARO01806.1 Feature: domain Description: AnsP Location: 2909290-2910625 bp Feature: domain Description: AnsP Location: 2909290-291 0625 bp Feature: gene Location: 2910936-2911829 bp Ori: ARO01807.1 Feature: domain Description: DUF915 Location: 2911086-2911827 bp Feature: domain Description: DUF91 5 Location: 291 1 086-291 1 827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PBP2_OppA (cd08504), RVT-GII, GIIM (pfam08388), PRK12313 (1,4-alpha-glucan branching protein GlgB), glgC (TIGR02091), PTR2 (pfam00854), acc_ester (TIGR03729), LytT (COG3279), YdiL (COG1266)
COG4932 (Uncharacterized surface anchored protein ), P-type_ATPase_H (cd02076), eno (TIGR01060), RplT (COG0292), DDE_Tnp_1 (pfam01609), PRK13342 (recombination factor protein RarA; Reviewed), HTH_MARR (smart00347), YczE (COG2364), ABC_BcrA_bacitracin_resist (cd03268), NosY (COG1277)
PRX_Atyp2cys (cd03014), PRK02471 (bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB), PRK01565 (thiamine biosynthesis protein ThiI; Provisional), NifS (COG1104), MdlB (COG1132), GT4_GtfA-like (cd04949), KxYKxGKxW (TIGR03715), DUF285 (pfam03382), Big_3 (pfam07523), DHQase_I (cd00502)
DUF2207 (pfam09972), UvrA (COG0178), MFS_MefA_like (cd06173), TauE (pfam01925), AzlD (pfam05437), FolK (COG0801), FolB (smart00905), Colicin_V (pfam02674), TroA_b (cd01020), antiport_nhaC (TIGR00931)
AnsP (COG1113), DUF915 (pfam06028)