myRT

myRT report for GCA_002117265.1_ASM211726v1

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Seq: CP017370.1 Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-6 sequence (5729 bp)
Overview 1 RT 1: 1-2346 bp Neighborhood of RT #1 [1, 2389] RVT-GII DUF3892 VapI Feature: gene Location: 1-1147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 9-427 bp Feature: gene Location: 1631-1945 bp Ori: ARO05351.1 Feature: domain Description: DUF3892 Location: 1658-1934 bp Feature: domain Description: DUF3892 Location: 1 658-1 934 bp Feature: gene Location: 2055-2389 bp Feature: domain Description: VapI Location: 2118-2346 bp Feature: domain Description: VapI Location: 21 1 8-2346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF3892 (pfam13031), VapI (COG3093)

Seq: CP017363.1 Lactobacillus plantarum strain TMW 1.277 chromosome, complete genome (3099387 bp)
Overview 1 RT 1: 17454-26032 bp 2 RT 2: 507689-511949 bp 3 RT 3: 1168156-1172623 bp 4 RT 4: 1234076-1241031 bp 5 RT 5: 1299484-1304577 bp 6 RT 6: 1648286-1653496 bp 7 RT 7: 1979927-1986375 bp 8 RT 8: 2120680-2125816 bp 9 RT 9: 2373264-2382775 bp 10 RT 10: 2490392-2498290 bp 11 RT 11: 2718832-2723223 bp 12 RT 12: 2822544-2827141 bp 13 RT 13: 2859709-2866380 bp Neighborhood of RT #1 [17454, 26040] proA PBP2_OppA RVT-GII GIIM PRK12313 glgC Neighborhood of RT #2 [507689, 512032] RVT-GII GIIM PTR2 acc_ester Neighborhood of RT #3 [1168156, 1172643] LytT RVT-GII GIIM YdiL Neighborhood of RT #4 [1234076, 1241078] COG4932 COG4932 RVT-GII GIIM P-type_ATPase_H eno Neighborhood of RT #5 [1299484, 1304618] RplT RVT-GII GIIM DDE_Tnp_1 PRK13342 Neighborhood of RT #6 [1648286, 1653501] HTH_MARR YczE RVT-GII GIIM ABC_BcrA_bacitracin_resist NosY Neighborhood of RT #7 [1979927, 1986392] PRX_Atyp2cys PRK02471 RVT-GII GIIM PRK01565 NifS Neighborhood of RT #8 [2120680, 2125896] RVT-GII GIIM MdlB GT4_GtfA-like Neighborhood of RT #9 [2373264, 2382798] KxYKxGKxW DUF285 DUF285 Big_3 Big_3 Big_3 Big_3 KxYKxGKxW DUF285 DUF285 Big_3 Big_3 Big_3 RVT-GII GIIM DHQase_I Neighborhood of RT #10 [2490392, 2498304] DUF2207 UvrA UvrA RVT-GII GIIM UvrA MFS_MefA_like Neighborhood of RT #11 [2718832, 2723243] RVT-GII GIIM TauE AzlD Neighborhood of RT #12 [2822544, 2827158] FolK FolB RVT-GII GIIM Colicin_V TroA_b Neighborhood of RT #13 [2859709, 2866382] antiport_nhaC RVT-GII GIIM AnsP DUF915 Feature: gene Location: 17454-18692 bp Ori: ARO02419.1 Feature: domain Description: proA Location: 17463-18687 bp Feature: domain Description: proA Location: 17463-18687 bp Feature: gene Location: 19153-20769 bp Ori: ARO02420.1 Feature: domain Description: PBP2_OppA Location: 19246-20758 bp Feature: domain Description: PBP2 _OppA Location: 192 46-2 0758 bp Feature: gene Location: 21341-22681 bp Ori: ARO04913.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21617-22235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1617-2 2 2 35 bp Feature: domain Description: GIIM Note: maturase Location: 22289-22508 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 2 89-2 2 508 bp Feature: gene Location: 23007-24911 bp Ori: ARO02421.1 Feature: domain Description: PRK12313 Location: 23022-24882 bp Feature: domain Description: PRK12 313 Location: 2 302 2 -2 4882 bp Feature: gene Location: 24901-26040 bp Ori: ARO02422.1 Feature: domain Description: glgC Location: 24910-26032 bp Feature: domain Description: glgC Location: 2 4910-2 6032 bp Feature: gene Location: 507689-509029 bp Ori: ARO04941.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507965-508583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507965-508583 bp Feature: domain Description: GIIM Note: maturase Location: 508637-508856 bp Feature: domain Description: GIIM Note: maturase Location: 508637-508856 bp Feature: gene Location: 509663-511135 bp Ori: ARO02820.1 Feature: domain Description: PTR2 Location: 509675-511127 bp Feature: domain Description: PTR2 Location: 509675-51112 7 bp Feature: gene Location: 511190-512032 bp Ori: ARO02821.1 Feature: domain Description: acc_ester Location: 511214-511949 bp Feature: domain Description: acc_ester Location: 5112 14-511949 bp Feature: gene Location: 1168156-1168923 bp Feature: domain Description: LytT Location: 1168162-1168846 bp Feature: domain Description: LytT Location: 1168162 -1168846 bp Feature: gene Location: 1169091-1169429 bp Feature: gene Location: 1169947-1171287 bp Ori: ARO04989.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1170223-1170841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11702 2 3-1170841 bp Feature: domain Description: GIIM Note: maturase Location: 1170895-1171114 bp Feature: domain Description: GIIM Note: maturase Location: 1170895-1171114 bp Feature: gene Location: 1171547-1171918 bp Feature: gene Location: 1171957-1172643 bp Feature: domain Description: YdiL Location: 1172011-1172623 bp Feature: domain Description: YdiL Location: 1172 011-1172 62 3 bp Feature: gene Location: 1234076-1235050 bp Ori: ARO03383.1 Feature: domain Description: COG4932 Location: 1234124-1234427 bp Feature: domain Description: COG4932 Location: 12 3412 4-12 3442 7 bp Feature: domain Description: COG4932 Location: 1234484-1235045 bp Feature: domain Description: COG4932 Location: 12 34484-12 35045 bp Feature: gene Location: 1235154-1235363 bp Feature: gene Location: 1235899-1237194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236355-1236760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 36355-12 36760 bp Feature: domain Description: GIIM Note: maturase Location: 1236814-1237033 bp Feature: domain Description: GIIM Note: maturase Location: 12 36814-12 37033 bp Feature: gene Location: 1237476-1239749 bp Ori: ARO03385.1 Feature: domain Description: P-type_ATPase_H Location: 1237506-1239714 bp Feature: domain Description: P-type_ATPase_H Location: 12 37506-12 39714 bp Feature: gene Location: 1239789-1241078 bp Ori: ARO03386.1 Feature: domain Description: eno Location: 1239801-1241031 bp Feature: domain Description: eno Location: 12 39801-12 41031 bp Feature: gene Location: 1299484-1299840 bp Ori: ARO03433.1 Feature: domain Description: RplT Location: 1299487-1299835 bp Feature: domain Description: RplT Location: 12 99487-12 99835 bp Feature: gene Location: 1300083-1300394 bp Feature: gene Location: 1300938-1302278 bp Ori: ARO04993.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301214-1301832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13012 14-1301832 bp Feature: domain Description: GIIM Note: maturase Location: 1301886-1302105 bp Feature: domain Description: GIIM Note: maturase Location: 1301886-1302 105 bp Feature: gene Location: 1302626-1303129 bp Ori: ARO03435.1 Feature: domain Description: DDE_Tnp_1 Location: 1302656-1303106 bp Feature: domain Description: DDE_Tnp_1 Location: 1302 656-1303106 bp Feature: gene Location: 1303455-1304618 bp Ori: ARO03436.1 Feature: domain Description: PRK13342 Location: 1303473-1304577 bp Feature: domain Description: PRK13342 Location: 1303473-1304577 bp Feature: gene Location: 1648286-1648720 bp Ori: ARO05023.1 Feature: domain Description: HTH_MARR Location: 1648364-1648637 bp Feature: domain Description: HTH_MARR Location: 1648364-1648637 bp Feature: gene Location: 1648717-1649385 bp Ori: ARO03722.1 Feature: domain Description: YczE Location: 1648738-1649356 bp Feature: domain Description: YczE Location: 1648738-1649356 bp Feature: gene Location: 1649482-1650822 bp Ori: ARO05024.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1649758-1650376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1649758-1650376 bp Feature: domain Description: GIIM Note: maturase Location: 1650430-1650649 bp Feature: domain Description: GIIM Note: maturase Location: 1650430-1650649 bp Feature: gene Location: 1651836-1652735 bp Ori: ARO03723.1 Feature: domain Description: ABC_BcrA_bacitracin_resist Location: 1651854-1652469 bp Feature: domain Description: ABC_BcrA_bacitracin_resist Location: 1651854-1652 469 bp Feature: gene Location: 1652749-1653501 bp Ori: ARO03724.1 Feature: domain Description: NosY Location: 1652752-1653496 bp Feature: domain Description: NosY Location: 1652 752 -1653496 bp Feature: gene Location: 1979927-1980535 bp Ori: ARO03986.1 Feature: domain Description: PRX_Atyp2cys Location: 1980098-1980515 bp Feature: domain Description: PRX_Atyp2 cys Location: 1980098-1980515 bp Feature: gene Location: 1980661-1981899 bp Ori: ARO03987.1 Feature: domain Description: PRK02471 Location: 1980673-1981870 bp Feature: domain Description: PRK02 471 Location: 1980673-1981870 bp Feature: gene Location: 1982112-1983452 bp Ori: ARO05046.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982388-1983006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982 388-1983006 bp Feature: domain Description: GIIM Note: maturase Location: 1983060-1983279 bp Feature: domain Description: GIIM Note: maturase Location: 1983060-19832 79 bp Feature: gene Location: 1984003-1985220 bp Ori: ARO03988.1 Feature: domain Description: PRK01565 Location: 1984009-1985170 bp Feature: domain Description: PRK01565 Location: 1984009-1985170 bp Feature: gene Location: 1985238-1986392 bp Ori: ARO03989.1 Feature: domain Description: NifS Location: 1985241-1986375 bp Feature: domain Description: NifS Location: 19852 41-1986375 bp Feature: gene Location: 2120680-2122020 bp Ori: ARO05055.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2120956-2121574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 0956-2 12 1574 bp Feature: domain Description: GIIM Note: maturase Location: 2121628-2121847 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 162 8-2 12 1847 bp Feature: gene Location: 2122584-2124347 bp Ori: ARO04122.1 Feature: domain Description: MdlB Location: 2122647-2124336 bp Feature: domain Description: MdlB Location: 2 12 2 647-2 12 4336 bp Feature: gene Location: 2124319-2125896 bp Ori: ARO04123.1 Feature: domain Description: GT4_GtfA-like Location: 2124325-2125816 bp Feature: domain Description: GT4_GtfA-like Location: 2 12 432 5-2 12 5816 bp Feature: gene Location: 2373264-2376383 bp Ori: ARO04329.1 Feature: domain Description: KxYKxGKxW Location: 2373279-2373345 bp Feature: domain Description: KxYKxGKxW Location: 2 3732 79-2 373345 bp Feature: domain Description: DUF285 Location: 2374101-2374428 bp Feature: domain Description: DUF2 85 Location: 2 374101-2 37442 8 bp Feature: domain Description: DUF285 Location: 2374446-2374683 bp Feature: domain Description: DUF2 85 Location: 2 374446-2 374683 bp Feature: domain Description: Big_3 Location: 2374902-2375115 bp Feature: domain Description: Big_3 Location: 2 374902 -2 375115 bp Feature: domain Description: Big_3 Location: 2375145-2375340 bp Feature: domain Description: Big_3 Location: 2 375145-2 375340 bp Feature: domain Description: Big_3 Location: 2375415-2375592 bp Feature: domain Description: Big_3 Location: 2 375415-2 375592 bp Feature: domain Description: Big_3 Location: 2375640-2375847 bp Feature: domain Description: Big_3 Location: 2 375640-2 375847 bp Feature: gene Location: 2376406-2379423 bp Ori: ARO04330.1 Feature: domain Description: KxYKxGKxW Location: 2376487-2376550 bp Feature: domain Description: KxYKxGKxW Location: 2 376487-2 376550 bp Feature: domain Description: DUF285 Location: 2377294-2377561 bp Feature: domain Description: DUF2 85 Location: 2 3772 94-2 377561 bp Feature: domain Description: DUF285 Location: 2377666-2377891 bp Feature: domain Description: DUF2 85 Location: 2 377666-2 377891 bp Feature: domain Description: Big_3 Location: 2378119-2378338 bp Feature: domain Description: Big_3 Location: 2 378119-2 378338 bp Feature: domain Description: Big_3 Location: 2378419-2378593 bp Feature: domain Description: Big_3 Location: 2 378419-2 378593 bp Feature: domain Description: Big_3 Location: 2378638-2378845 bp Feature: domain Description: Big_3 Location: 2 378638-2 378845 bp Feature: gene Location: 2379837-2381177 bp Ori: ARO05068.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2380113-2380731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 380113-2 380731 bp Feature: domain Description: GIIM Note: maturase Location: 2380785-2381004 bp Feature: domain Description: GIIM Note: maturase Location: 2 380785-2 381004 bp Feature: gene Location: 2381798-2382019 bp Feature: gene Location: 2382025-2382798 bp Ori: ARO04332.1 Feature: domain Description: DHQase_I Location: 2382103-2382775 bp Feature: domain Description: DHQase_I Location: 2 382 103-2 382 775 bp Feature: gene Location: 2490392-2492224 bp Ori: ARO04420.1 Feature: domain Description: DUF2207 Location: 2490494-2491997 bp Feature: domain Description: DUF2 2 07 Location: 2 490494-2 491997 bp Feature: gene Location: 2492368-2493624 bp Feature: domain Description: UvrA Location: 2492395-2492761 bp Feature: domain Description: UvrA Location: 2 492 395-2 492 761 bp Feature: domain Description: UvrA Location: 2492803-2493616 bp Feature: domain Description: UvrA Location: 2 492 803-2 493616 bp Feature: gene Location: 2493710-2495050 bp Ori: ARO05076.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2493986-2494604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 493986-2 494604 bp Feature: domain Description: GIIM Note: maturase Location: 2494658-2494877 bp Feature: domain Description: GIIM Note: maturase Location: 2 494658-2 494877 bp Feature: gene Location: 2495514-2496782 bp Feature: domain Description: UvrA Location: 2495538-2496765 bp Feature: domain Description: UvrA Location: 2 495538-2 496765 bp Feature: gene Location: 2497090-2498304 bp Ori: ARO04421.1 Feature: domain Description: MFS_MefA_like Location: 2497132-2498290 bp Feature: domain Description: MFS_MefA_like Location: 2 497132 -2 4982 90 bp Feature: gene Location: 2718832-2719263 bp Feature: gene Location: 2719373-2719732 bp Feature: gene Location: 2720218-2721558 bp Ori: ARO05085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2720494-2721112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 72 0494-2 72 1112 bp Feature: domain Description: GIIM Note: maturase Location: 2721166-2721385 bp Feature: domain Description: GIIM Note: maturase Location: 2 72 1166-2 72 1385 bp Feature: gene Location: 2722112-2722833 bp Feature: domain Description: TauE Location: 2722133-2722577 bp Feature: domain Description: TauE Location: 2 72 2 133-2 72 2 577 bp Feature: gene Location: 2722893-2723243 bp Ori: ARO04605.1 Feature: domain Description: AzlD Location: 2722932-2723223 bp Feature: domain Description: AzlD Location: 2 72 2 932 -2 72 32 2 3 bp Feature: gene Location: 2822544-2823056 bp Ori: ARO04685.1 Feature: domain Description: FolK Location: 2822562-2823012 bp Feature: domain Description: FolK Location: 2 82 2 562 -2 82 3012 bp Feature: gene Location: 2823046-2823414 bp Ori: ARO04686.1 Feature: domain Description: FolB Location: 2823055-2823394 bp Feature: domain Description: FolB Location: 2 82 3055-2 82 3394 bp Feature: gene Location: 2823645-2824985 bp Ori: ARO05097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2823921-2824539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 392 1-2 82 4539 bp Feature: domain Description: GIIM Note: maturase Location: 2824593-2824812 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 4593-2 82 4812 bp Feature: gene Location: 2825546-2826079 bp Ori: ARO04687.1 Feature: domain Description: Colicin_V Location: 2825555-2826014 bp Feature: domain Description: Colicin_V Location: 2 82 5555-2 82 6014 bp Feature: gene Location: 2826250-2827158 bp Ori: ARO04688.1 Feature: domain Description: TroA_b Location: 2826358-2827141 bp Feature: domain Description: TroA_b Location: 2 82 6358-2 82 7141 bp Feature: gene Location: 2859709-2860014 bp Feature: gene Location: 2860053-2861477 bp Ori: ARO04712.1 Feature: domain Description: antiport_nhaC Location: 2860086-2861424 bp Feature: domain Description: antiport_nhaC Location: 2 860086-2 86142 4 bp Feature: gene Location: 2861675-2863015 bp Ori: ARO05098.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2861951-2862569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 861951-2 862 569 bp Feature: domain Description: GIIM Note: maturase Location: 2862623-2862842 bp Feature: domain Description: GIIM Note: maturase Location: 2 862 62 3-2 862 842 bp Feature: gene Location: 2863819-2865201 bp Ori: ARO04713.1 Feature: domain Description: AnsP Location: 2863843-2865178 bp Feature: domain Description: AnsP Location: 2 863843-2 865178 bp Feature: gene Location: 2865489-2866382 bp Ori: ARO04714.1 Feature: domain Description: DUF915 Location: 2865639-2866380 bp Feature: domain Description: DUF915 Location: 2 865639-2 866380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PBP2_OppA (cd08504), RVT-GII, GIIM (pfam08388), PRK12313 (1,4-alpha-glucan branching protein GlgB), glgC (TIGR02091), PTR2 (pfam00854), acc_ester (TIGR03729), LytT (COG3279), YdiL (COG1266)
COG4932 (Uncharacterized surface anchored protein ), P-type_ATPase_H (cd02076), eno (TIGR01060), RplT (COG0292), DDE_Tnp_1 (pfam01609), PRK13342 (recombination factor protein RarA; Reviewed), HTH_MARR (smart00347), YczE (COG2364), ABC_BcrA_bacitracin_resist (cd03268), NosY (COG1277)
PRX_Atyp2cys (cd03014), PRK02471 (bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB), PRK01565 (thiamine biosynthesis protein ThiI; Provisional), NifS (COG1104), MdlB (COG1132), GT4_GtfA-like (cd04949), KxYKxGKxW (TIGR03715), DUF285 (pfam03382), Big_3 (pfam07523), DHQase_I (cd00502)
DUF2207 (pfam09972), UvrA (COG0178), MFS_MefA_like (cd06173), TauE (pfam01925), AzlD (pfam05437), FolK (COG0801), FolB (smart00905), Colicin_V (pfam02674), TroA_b (cd01020), antiport_nhaC (TIGR00931)
AnsP (COG1113), DUF915 (pfam06028)