myRT

myRT report for GCA_002119845.1_ASM211984v1

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Seq: CP020910.1 Rhizobium etli strain NXC12 plasmid pRetNXC12d, complete sequence (543095 bp)
Overview 1 RT 1: 186349-190961 bp 2 RT 2: 347242-353004 bp 3 RT 3: 396857-400850 bp Neighborhood of RT #1 [186349, 191005] Phage_int_SAM_1 INT_RitA_C_like DDE_Tnp_IS66 RVT-GII GIIM COG3436 Neighborhood of RT #2 [347242, 353004] HTH_1 PBP2_NodD DDE_3 RVT-GII GIIM COG3415 Neighborhood of RT #3 [396857, 401053] DDE_3 RVT-GII GIIM COG3415 rve Feature: gene Location: 186349-187590 bp Ori: ARQ13285.1 Feature: domain Description: Phage_int_SAM_1 Location: 186715-186946 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 8671 5-1 86946 bp Feature: domain Description: INT_RitA_C_like Location: 187036-187564 bp Feature: domain Description: INT_RitA_C_like Location: 1 87036-1 87564 bp Feature: gene Location: 187642-188643 bp Ori: ARQ13286.1 Feature: domain Description: DDE_Tnp_IS66 Location: 187705-188509 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 87705-1 88509 bp Feature: gene Location: 188640-189899 bp Ori: ARQ13287.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188844-189501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88844-1 89501 bp Feature: domain Description: GIIM Note: maturase Location: 189579-189786 bp Feature: domain Description: GIIM Note: maturase Location: 1 89579-1 89786 bp Feature: gene Location: 190009-190359 bp Feature: gene Location: 190391-191005 bp Ori: ARQ13289.1 Feature: domain Description: COG3436 Location: 190646-190961 bp Feature: domain Description: COG3436 Location: 1 90646-1 90961 bp Feature: gene Location: 347242-348219 bp Ori: ARQ13439.1 Gene: nodD-2 Feature: domain Description: HTH_1 Location: 347266-347443 bp Feature: domain Description: HTH_1 Location: 347266-347443 bp Feature: domain Description: PBP2_NodD Location: 347536-348133 bp Feature: domain Description: PBP2_NodD Location: 347536-3481 33 bp Feature: gene Location: 348506-348985 bp Ori: ARQ13440.1 Feature: domain Description: DDE_3 Location: 348521-348884 bp Feature: domain Description: DDE_3 Location: 348521 -348884 bp Feature: gene Location: 349067-350326 bp Ori: ARQ13441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349283-349937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349283-349937 bp Feature: domain Description: GIIM Note: maturase Location: 350018-350234 bp Feature: domain Description: GIIM Note: maturase Location: 35001 8-350234 bp Feature: gene Location: 350965-351324 bp Ori: ARQ13442.1 Feature: domain Description: COG3415 Location: 350968-351313 bp Feature: domain Description: COG341 5 Location: 350968-351 31 3 bp Feature: gene Location: 352306-353004 bp Feature: gene Location: 396857-397204 bp Feature: gene Location: 397156-397635 bp Ori: ARQ13478.1 Feature: domain Description: DDE_3 Location: 397171-397534 bp Feature: domain Description: DDE_3 Location: 3971 71 -397534 bp Feature: gene Location: 397717-398976 bp Ori: ARQ13479.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397933-398587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397933-398587 bp Feature: domain Description: GIIM Note: maturase Location: 398668-398884 bp Feature: domain Description: GIIM Note: maturase Location: 398668-398884 bp Feature: gene Location: 399615-399974 bp Ori: ARQ13480.1 Feature: domain Description: COG3415 Location: 399618-399963 bp Feature: domain Description: COG341 5 Location: 39961 8-399963 bp Feature: gene Location: 400061-401053 bp Ori: ARQ13481.1 Feature: domain Description: rve Location: 400454-400850 bp Feature: domain Description: rve Location: 400454-400850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), HTH_1 (pfam00126), PBP2_NodD (cd08462), DDE_3 (pfam13358), COG3415 (Transposase )
rve (pfam00665)

Seq: CP020906.1 Rhizobium etli strain NXC12 chromosome, complete genome (4297568 bp)
Overview 1 RT 1: 2973551-2977335 bp Neighborhood of RT #1 [2973551, 2977379] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 Feature: gene Location: 2973551-2973946 bp Feature: gene Location: 2973983-2975017 bp Ori: ARQ11025.1 Feature: domain Description: DDE_Tnp_IS66 Location: 2974049-2974862 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 974049-2 974862 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2974883-2974997 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 974883-2 974997 bp Feature: gene Location: 2975014-2976273 bp Ori: ARQ11026.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2975218-2975875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9752 18-2 975875 bp Feature: domain Description: GIIM Note: maturase Location: 2975953-2976160 bp Feature: domain Description: GIIM Note: maturase Location: 2 975953-2 976160 bp Feature: gene Location: 2976383-2976733 bp Feature: gene Location: 2976765-2977379 bp Ori: ARQ11028.1 Feature: domain Description: COG3436 Location: 2977038-2977335 bp Feature: domain Description: COG3436 Location: 2 977038-2 977335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase )