myRT

myRT report for GCA_002142615.1_ASM214261v1

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Seq: CP021151.1 Photobacterium damselae subsp. damselae strain KC-Na-1 chromosome I, complete sequence (3134662 bp)
Overview 1 RT 1: 77359-81602 bp 2 RT 2: 413202-419696 bp 3 RT 3: 566533-571531 bp 4 RT 4: 865018-872331 bp 5 RT 5: 1105130-1112686 bp 6 RT 6: 1782810-1788733 bp 7 RT 7: 1991692-1998656 bp 8 RT 8: 2472495-2480186 bp 9 RT 9: 2814658-2820588 bp Neighborhood of RT #1 [77359, 81646] RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 nicotinamidase Neighborhood of RT #2 [413202, 419698] AlsT PRK02101 RVT-GII GIIM PRK11192 TrmN6 Neighborhood of RT #3 [566533, 571539] RVT-GII GIIM DeoR PRK10512 Neighborhood of RT #4 [865018, 872333] HtpG adk RVT-GII GIIM HemH PRK15074 Neighborhood of RT #5 [1105130, 1112706] ApbE RVT-GII COG4584 PRK09183 RVT-GII GIIM DUF5062 DUF3080 Neighborhood of RT #6 [1782810, 1788738] SapD SapF RVT-GII GIIM PRK00230 YciM Neighborhood of RT #7 [1991692, 1998661] PRK11174 PRK11160 RVT-GII GIIM aat PRK01305 Neighborhood of RT #8 [2472495, 2480239] LuxS COG4764 RVT-GII GIIM PRK02107 PqqL PqqL Neighborhood of RT #9 [2814658, 2820590] PRK11041 FtsN RVT-GII GIIM HslV hslU Feature: gene Location: 77359-77538 bp Feature: gene Location: 77649-77834 bp Feature: gene Location: 78075-79382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78312-78933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7831 2-78933 bp Feature: domain Description: GIIM Note: maturase Location: 78975-79200 bp Feature: domain Description: GIIM Note: maturase Location: 78975-79200 bp Feature: gene Location: 79651-80958 bp Ori: ARR48188.1 Feature: domain Description: Nterm_IS4 Location: 79702-79972 bp Feature: domain Description: Nterm_IS4 Location: 79702-79972 bp Feature: domain Description: DDE_Tnp_1 Location: 80026-80689 bp Feature: domain Description: DDE_Tnp_1 Location: 80026-80689 bp Feature: gene Location: 81008-81646 bp Ori: ARR48189.1 Feature: domain Description: nicotinamidase Location: 81020-81602 bp Feature: domain Description: nicotinamidase Location: 81 020-81 602 bp Feature: gene Location: 413202-414629 bp Ori: ARR48432.1 Feature: domain Description: AlsT Location: 413211-414546 bp Feature: domain Description: AlsT Location: 41 321 1 -41 4546 bp Feature: gene Location: 414801-415574 bp Ori: ARR48433.1 Feature: domain Description: PRK02101 Location: 414804-415569 bp Feature: domain Description: PRK021 01 Location: 41 4804-41 5569 bp Feature: gene Location: 416190-417500 bp Ori: ARR48434.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416406-417021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 6406-41 7021 bp Feature: domain Description: GIIM Note: maturase Location: 417072-417273 bp Feature: domain Description: GIIM Note: maturase Location: 41 7072-41 7273 bp Feature: gene Location: 417564-418856 bp Ori: ARR48435.1 Feature: domain Description: PRK11192 Location: 417573-418824 bp Feature: domain Description: PRK1 1 1 92 Location: 41 7573-41 8824 bp Feature: gene Location: 418985-419698 bp Ori: ARR48436.1 Feature: domain Description: TrmN6 Location: 418994-419696 bp Feature: domain Description: TrmN6 Location: 41 8994-41 9696 bp Feature: gene Location: 566533-567843 bp Ori: ARR48547.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566749-567364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566749-567364 bp Feature: domain Description: GIIM Note: maturase Location: 567415-567616 bp Feature: domain Description: GIIM Note: maturase Location: 56741 5-56761 6 bp Feature: gene Location: 568380-569354 bp Ori: ARR48548.1 Feature: domain Description: DeoR Location: 568401-569340 bp Feature: domain Description: DeoR Location: 568401 -569340 bp Feature: gene Location: 569620-571539 bp Ori: ARR48549.1 Feature: domain Description: PRK10512 Location: 569623-571531 bp Feature: domain Description: PRK1 051 2 Location: 569623-571 531 bp Feature: gene Location: 865018-866919 bp Ori: ARR48815.1 Feature: domain Description: HtpG Location: 865042-866917 bp Feature: domain Description: HtpG Location: 865042-86691 7 bp Feature: gene Location: 867055-867699 bp Ori: ARR48816.1 Feature: domain Description: adk Location: 867058-867694 bp Feature: domain Description: adk Location: 867058-867694 bp Feature: gene Location: 868317-869627 bp Ori: ARR48817.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868533-869148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868533-8691 48 bp Feature: domain Description: GIIM Note: maturase Location: 869199-869400 bp Feature: domain Description: GIIM Note: maturase Location: 8691 99-869400 bp Feature: gene Location: 869879-870856 bp Ori: ARR48818.1 Feature: domain Description: HemH Location: 869897-870845 bp Feature: domain Description: HemH Location: 869897-870845 bp Feature: gene Location: 871029-872333 bp Ori: ARR48819.1 Feature: domain Description: PRK15074 Location: 871032-872331 bp Feature: domain Description: PRK1 5074 Location: 871 032-872331 bp Feature: gene Location: 1105130-1105360 bp Feature: gene Location: 1105583-1106644 bp Ori: ARR49012.1 Feature: domain Description: ApbE Location: 1105628-1106624 bp Feature: domain Description: ApbE Location: 1 1 05628-1 1 06624 bp Feature: gene Location: 1107234-1107992 bp Ori: ARR49013.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1107450-1107945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 07450-1 1 07945 bp Feature: gene Location: 1108034-1109077 bp Ori: ARR49014.1 Feature: domain Description: COG4584 Location: 1108037-1108904 bp Feature: domain Description: COG4584 Location: 1 1 08037-1 1 08904 bp Feature: gene Location: 1109064-1109822 bp Ori: ARR49015.1 Feature: domain Description: PRK09183 Location: 1109073-1109814 bp Feature: domain Description: PRK091 83 Location: 1 1 09073-1 1 0981 4 bp Feature: gene Location: 1109878-1110495 bp Ori: ARR49016.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109884-1110016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 09884-1 1 1 001 6 bp Feature: domain Description: GIIM Note: maturase Location: 1110067-1110277 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 0067-1 1 1 0277 bp Feature: gene Location: 1111212-1111472 bp Ori: ARR49017.1 Feature: domain Description: DUF5062 Location: 1111224-1111467 bp Feature: domain Description: DUF5062 Location: 1 1 1 1 224-1 1 1 1 467 bp Feature: gene Location: 1111621-1112706 bp Ori: ARR49018.1 Feature: domain Description: DUF3080 Location: 1111726-1112686 bp Feature: domain Description: DUF3080 Location: 1 1 1 1 726-1 1 1 2686 bp Feature: gene Location: 1782810-1783808 bp Ori: ARR49555.1 Feature: domain Description: SapD Location: 1782813-1783797 bp Feature: domain Description: SapD Location: 1 78281 3-1 783797 bp Feature: gene Location: 1783805-1784629 bp Ori: ARR49556.1 Feature: domain Description: SapF Location: 1783808-1784573 bp Feature: domain Description: SapF Location: 1 783808-1 784573 bp Feature: gene Location: 1784704-1786014 bp Ori: ARR49557.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784920-1785535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 784920-1 785535 bp Feature: domain Description: GIIM Note: maturase Location: 1785586-1785787 bp Feature: domain Description: GIIM Note: maturase Location: 1 785586-1 785787 bp Feature: gene Location: 1786624-1787343 bp Ori: ARR49558.1 Feature: domain Description: PRK00230 Location: 1786648-1787332 bp Feature: domain Description: PRK00230 Location: 1 786648-1 787332 bp Feature: gene Location: 1787569-1788738 bp Ori: ARR49559.1 Feature: domain Description: YciM Location: 1787572-1788733 bp Feature: domain Description: YciM Location: 1 787572-1 788733 bp Feature: gene Location: 1991692-1993473 bp Ori: ARR49711.1 Feature: domain Description: PRK11174 Location: 1991695-1993444 bp Feature: domain Description: PRK1 1 1 74 Location: 1 991 695-1 993444 bp Feature: gene Location: 1993466-1995187 bp Ori: ARR49712.1 Feature: domain Description: PRK11160 Location: 1993469-1995179 bp Feature: domain Description: PRK1 1 1 60 Location: 1 993469-1 9951 79 bp Feature: gene Location: 1995245-1996555 bp Ori: ARR49713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995461-1996076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 995461 -1 996076 bp Feature: domain Description: GIIM Note: maturase Location: 1996127-1996328 bp Feature: domain Description: GIIM Note: maturase Location: 1 9961 27-1 996328 bp Feature: gene Location: 1997252-1997965 bp Ori: ARR49714.1 Feature: domain Description: aat Location: 1997288-1997948 bp Feature: domain Description: aat Location: 1 997288-1 997948 bp Feature: gene Location: 1997969-1998661 bp Ori: ARR49715.1 Feature: domain Description: PRK01305 Location: 1997978-1998656 bp Feature: domain Description: PRK01 305 Location: 1 997978-1 998656 bp Feature: gene Location: 2472495-2473010 bp Ori: ARR50092.1 Feature: domain Description: LuxS Location: 2472498-2472972 bp Feature: domain Description: LuxS Location: 2472498-2472972 bp Feature: gene Location: 2473049-2473660 bp Ori: ARR50093.1 Feature: domain Description: COG4764 Location: 2473073-2473625 bp Feature: domain Description: COG4764 Location: 2473073-2473625 bp Feature: gene Location: 2473743-2475053 bp Ori: ARR50094.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2473959-2474574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2473959-2474574 bp Feature: domain Description: GIIM Note: maturase Location: 2474625-2474826 bp Feature: domain Description: GIIM Note: maturase Location: 2474625-2474826 bp Feature: gene Location: 2475673-2477238 bp Ori: ARR50749.1 Feature: domain Description: PRK02107 Location: 2475679-2477230 bp Feature: domain Description: PRK021 07 Location: 2475679-2477230 bp Feature: gene Location: 2477393-2480239 bp Ori: ARR50095.1 Feature: domain Description: PqqL Location: 2477522-2478770 bp Feature: domain Description: PqqL Location: 2477522-2478770 bp Feature: domain Description: PqqL Location: 2478929-2480186 bp Feature: domain Description: PqqL Location: 2478929-24801 86 bp Feature: gene Location: 2814658-2815662 bp Ori: ARR50388.1 Feature: domain Description: PRK11041 Location: 2814733-2815651 bp Feature: domain Description: PRK1 1 041 Location: 281 4733-281 5651 bp Feature: gene Location: 2815790-2816698 bp Ori: ARR50389.1 Feature: domain Description: FtsN Location: 2816066-2816684 bp Feature: domain Description: FtsN Location: 281 6066-281 6684 bp Feature: gene Location: 2816725-2818035 bp Ori: ARR50390.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2816941-2817556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 6941 -281 7556 bp Feature: domain Description: GIIM Note: maturase Location: 2817607-2817808 bp Feature: domain Description: GIIM Note: maturase Location: 281 7607-281 7808 bp Feature: gene Location: 2818721-2819248 bp Ori: ARR50391.1 Feature: domain Description: HslV Location: 2818727-2819243 bp Feature: domain Description: HslV Location: 281 8727-281 9243 bp Feature: gene Location: 2819259-2820590 bp Ori: ARR50392.1 Feature: domain Description: hslU Location: 2819271-2820588 bp Feature: domain Description: hslU Location: 281 9271 -2820588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), nicotinamidase (cd01011), AlsT (COG1115), PRK02101 (peroxide stress protein YaaA), PRK11192 (ATP-dependent RNA helicase SrmB; Provisional), TrmN6 (COG4123), DeoR (COG2390)
PRK10512 (selenocysteinyl-tRNA-specific translation factor; Provisional), HtpG (COG0326), adk (TIGR01351), HemH (COG0276), PRK15074 (inosine/guanosine kinase; Provisional), ApbE (pfam02424), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), DUF5062 (pfam16691), DUF3080 (pfam11279)
SapD (COG4170), SapF (COG4167), PRK00230 (orotidine-5'-phosphate decarboxylase), YciM (COG2956), PRK11174 (cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed), PRK11160 (cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed), aat (TIGR00667), PRK01305 (arginyl-tRNA-protein transferase; Provisional), LuxS (pfam02664), COG4764 (Uncharacterized protein )
PRK02107 (glutamate--cysteine ligase; Provisional), PqqL (COG0612), PRK11041 (DNA-binding transcriptional regulator CytR; Provisional), FtsN (COG3087), HslV (COG5405), hslU (TIGR00390)

Seq: CP021152.1 Photobacterium damselae subsp. damselae strain KC-Na-1 chromosome II, complete sequence (1105401 bp)
Overview 1 RT 1: 49687-55377 bp 2 RT 2: 413686-421851 bp Neighborhood of RT #1 [49687, 55514] YafK PRK10668 LuxT_C RVT-GII GIIM TolC EmrA Neighborhood of RT #2 [413686, 421856] PRK11142 PRK10423 RVT-GII COG4584 PRK09183 RVT-GII PRK11534 gcvT Feature: gene Location: 49687-50370 bp Ori: ARR51631.1 Feature: domain Description: YafK Location: 49849-50221 bp Feature: domain Description: YafK Location: 49849-502 2 1 bp Feature: gene Location: 50584-51045 bp Ori: ARR50810.1 Feature: domain Description: PRK10668 Location: 50587-50770 bp Feature: domain Description: PRK10668 Location: 50587-50770 bp Feature: domain Description: LuxT_C Location: 50773-51037 bp Feature: domain Description: LuxT_C Location: 50773-51037 bp Feature: gene Location: 51647-52957 bp Ori: ARR50811.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51863-52478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51863-52 478 bp Feature: domain Description: GIIM Note: maturase Location: 52529-52730 bp Feature: domain Description: GIIM Note: maturase Location: 52 52 9-52 730 bp Feature: gene Location: 53104-54543 bp Ori: ARR50812.1 Feature: domain Description: TolC Location: 53215-54496 bp Feature: domain Description: TolC Location: 532 15-54496 bp Feature: gene Location: 54540-55514 bp Ori: ARR50813.1 Feature: domain Description: EmrA Location: 54552-55377 bp Feature: domain Description: EmrA Location: 54552 -55377 bp Feature: gene Location: 413686-414606 bp Ori: ARR51118.1 Feature: domain Description: PRK11142 Location: 413689-414601 bp Feature: domain Description: PRK11142 Location: 413689-414601 bp Feature: gene Location: 414793-415797 bp Ori: ARR51119.1 Feature: domain Description: PRK10423 Location: 414805-415780 bp Feature: domain Description: PRK1042 3 Location: 414805-415780 bp Feature: gene Location: 416129-416576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416135-416390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416135-416390 bp Feature: gene Location: 416673-417716 bp Ori: ARR51120.1 Feature: domain Description: COG4584 Location: 416676-417543 bp Feature: domain Description: COG4584 Location: 416676-417543 bp Feature: gene Location: 417703-418461 bp Ori: ARR51121.1 Feature: domain Description: PRK09183 Location: 417712-418453 bp Feature: domain Description: PRK09183 Location: 417712 -418453 bp Feature: gene Location: 418514-419065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418712-419054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418712 -419054 bp Feature: gene Location: 419666-420364 bp Ori: ARR51122.1 Feature: domain Description: PRK11534 Location: 419717-420332 bp Feature: domain Description: PRK11534 Location: 419717-42 0332 bp Feature: gene Location: 420738-421856 bp Ori: ARR51123.1 Gene: gcvT Feature: domain Description: gcvT Location: 420747-421851 bp Feature: domain Description: gcvT Location: 42 0747-42 1851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafK (COG3034), PRK10668 (DNA-binding transcriptional repressor AcrR; Provisional), LuxT_C (pfam18285), RVT-GII, GIIM (pfam08388), TolC (COG1538), EmrA (COG1566), PRK11142 (ribokinase; Provisional), PRK10423 (transcriptional repressor RbsR; Provisional), COG4584 (Transposase )
PRK09183 (transposase/IS protein; Provisional), PRK11534 (DNA-binding transcriptional regulator CsiR; Provisional), gcvT (TIGR00528)