myRT

myRT report for GCA_002150905.1_ASM215090v1

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Seq: CP019696.1 Shigella sonnei strain 75/02 plasmid pInv_75_02_1, complete sequence (214565 bp)
Overview 1 RT 1: 22619-25785 bp 2 RT 2: 105086-108973 bp 3 RT 3: 133595-136258 bp 4 RT 4: 146484-148197 bp Neighborhood of RT #1 [22619, 25808] COG4584 Paired_CXXCH_1 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C Neighborhood of RT #2 [105086, 109056] DUF1472 DDE_Tnp_1 RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Neighborhood of RT #3 [133595, 136260] PRK09409 Tra5 RVT-GII GIIM DDE_Tnp_IS66_C Neighborhood of RT #4 [146484, 148197] PHA02517 RVT-GII Feature: gene Location: 22619-23791 bp Ori: ARS09158.1 Feature: domain Description: COG4584 Location: 22622-23459 bp Feature: domain Description: COG4584 Location: 22622-23459 bp Feature: gene Location: 24161-24555 bp Feature: domain Description: Paired_CXXCH_1 Location: 24176-24278 bp Feature: domain Description: Paired_CXXCH_1 Location: 241 76-24278 bp Feature: gene Location: 24597-25004 bp Ori: ARS09159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24603-24978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24603-24978 bp Feature: gene Location: 24962-25168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24971-25169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24971 -251 69 bp Feature: gene Location: 25220-25546 bp Ori: ARS09349.1 Feature: domain Description: GIIM Note: maturase Location: 25247-25469 bp Feature: domain Description: GIIM Note: maturase Location: 25247-25469 bp Feature: gene Location: 25617-25808 bp Ori: ARS09160.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 25674-25785 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25674-25785 bp Feature: gene Location: 105086-105520 bp Feature: domain Description: DUF1472 Location: 105176-105476 bp Feature: domain Description: DUF1 472 Location: 1 051 76-1 05476 bp Feature: gene Location: 105691-106473 bp Ori: ARS09233.1 Feature: domain Description: DDE_Tnp_1 Location: 105697-106405 bp Feature: domain Description: DDE_Tnp_1 Location: 1 05697-1 06405 bp Feature: gene Location: 106406-107119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106607-107093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06607-1 07093 bp Feature: gene Location: 107213-107881 bp Ori: ARS09234.1 Feature: domain Description: HTH_23 Location: 107321-107408 bp Feature: domain Description: HTH_23 Location: 1 07321 -1 07408 bp Feature: domain Description: InsE Location: 107537-107732 bp Feature: domain Description: InsE Location: 1 07537-1 07732 bp Feature: gene Location: 108025-109056 bp Ori: ARS09235.1 Feature: domain Description: HTH_23 Location: 108103-108244 bp Feature: domain Description: HTH_23 Location: 1 081 03-1 08244 bp Feature: domain Description: HTH_33 Location: 108349-108496 bp Feature: domain Description: HTH_33 Location: 1 08349-1 08496 bp Feature: domain Description: DDE_3 Location: 108553-108973 bp Feature: domain Description: DDE_3 Location: 1 08553-1 08973 bp Feature: gene Location: 133595-133759 bp Ori: ARS09361.1 Feature: domain Description: PRK09409 Location: 133598-133757 bp Feature: domain Description: PRK09409 Location: 1 33598-1 33757 bp Feature: gene Location: 133868-134101 bp Feature: domain Description: Tra5 Location: 133892-134084 bp Feature: domain Description: Tra5 Location: 1 33892-1 34084 bp Feature: gene Location: 134366-135456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134414-135071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3441 4-1 35071 bp Feature: gene Location: 135741-136067 bp Ori: ARS09362.1 Feature: domain Description: GIIM Note: maturase Location: 135774-135993 bp Feature: domain Description: GIIM Note: maturase Location: 1 35774-1 35993 bp Feature: gene Location: 136171-136260 bp Ori: ARS09262.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 136183-136258 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 361 83-1 36258 bp Feature: gene Location: 146484-146678 bp Feature: domain Description: PHA02517 Location: 146517-146679 bp Feature: domain Description: PHA0251 7 Location: 1 4651 7-1 46679 bp Feature: gene Location: 146671-146913 bp Feature: gene Location: 146873-147112 bp Ori: ARS09269.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146879-147086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46879-1 47086 bp Feature: gene Location: 147206-147384 bp Feature: gene Location: 147775-148197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), Paired_CXXCH_1 (pfam09699), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), DUF1472 (pfam07339), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592)
DDE_3 (pfam13358), PRK09409 (IS2 transposase TnpB; Reviewed), Tra5 (COG2801), PHA02517 (putative transposase OrfB; Reviewed)