myRT

myRT report for GCA_002155245.1_ASM215524v1

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Seq: CP016613.1 Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence (2000873 bp)
Overview 1 RT 1: 169211-179517 bp 2 RT 2: 1724348-1730856 bp 3 RT 3: 1915678-1963791 bp Neighborhood of RT #1 [169211, 179517] Nterm_IS4 DDE_Tnp_1 MTES_1575 DUF3320 RVT-GII DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 Neighborhood of RT #2 [1724348, 1730915] PolY_like COG4544 RVT-GII MFS_MucK AcrR Neighborhood of RT #3 [1915678, 1963820] PRK11169 RVT-GII PRK12467 PRK12467 PRK12316 PRK12467 PRK12467 PP-binding PRK12316 Thioesterase entF PRK12467 PP-binding PKS PKS_AT PRK12467 HemL seco_metab_LLM PRK12467 PRK12467 PP-binding Condensation A_NRPS_alphaAR PRK12467 COG4908 EntF PRK12467 PRK12467 Feature: gene Location: 169211-170539 bp Ori: ARS58181.1 Feature: domain Description: Nterm_IS4 Location: 169259-169535 bp Feature: domain Description: Nterm_IS4 Location: 1 69259-1 69535 bp Feature: domain Description: DDE_Tnp_1 Location: 169598-170270 bp Feature: domain Description: DDE_Tnp_1 Location: 1 69598-1 70270 bp Feature: gene Location: 170912-171976 bp Ori: ARS58182.1 Feature: domain Description: MTES_1575 Location: 170996-171287 bp Feature: domain Description: MTES_1 575 Location: 1 70996-1 71 287 bp Feature: domain Description: DUF3320 Location: 171461-171602 bp Feature: domain Description: DUF3320 Location: 1 71 461 -1 71 602 bp Feature: gene Location: 171973-173505 bp Ori: ARS58183.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172384-173074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72384-1 73074 bp Feature: gene Location: 173873-178459 bp Feature: domain Description: DUF4011 Location: 173981-174566 bp Feature: domain Description: DUF401 1 Location: 1 73981 -1 74566 bp Feature: domain Description: DEXXQc_SF1 Location: 174905-175481 bp Feature: domain Description: DEXXQc_SF1 Location: 1 74905-1 75481 bp Feature: domain Description: DEXXQc_SF1 Location: 177089-177851 bp Feature: domain Description: DEXXQc_SF1 Location: 1 77089-1 77851 bp Feature: domain Description: KOG1803 Location: 178202-178370 bp Feature: domain Description: KOG1 803 Location: 1 78202-1 78370 bp Feature: gene Location: 179296-179517 bp Feature: gene Location: 1724348-1725919 bp Ori: ARS59213.1 Feature: domain Description: PolY_like Location: 1724363-1725413 bp Feature: domain Description: PolY_like Location: 1 724363-1 72541 3 bp Feature: gene Location: 1725852-1726787 bp Ori: ARS59214.1 Feature: domain Description: COG4544 Location: 1725981-1726461 bp Feature: domain Description: COG4544 Location: 1 725981 -1 726461 bp Feature: gene Location: 1726832-1728364 bp Ori: ARS59215.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1727243-1727933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 727243-1 727933 bp Feature: gene Location: 1728867-1730123 bp Ori: ARS59216.1 Feature: domain Description: MFS_MucK Location: 1728960-1730100 bp Feature: domain Description: MFS_MucK Location: 1 728960-1 7301 00 bp Feature: gene Location: 1730340-1730915 bp Ori: ARS59217.1 Feature: domain Description: AcrR Location: 1730352-1730856 bp Feature: domain Description: AcrR Location: 1 730352-1 730856 bp Feature: gene Location: 1915678-1916202 bp Ori: ARS59352.1 Feature: domain Description: PRK11169 Location: 1915744-1916197 bp Feature: domain Description: PRK1 1 1 69 Location: 1 91 5744-1 91 61 97 bp Feature: gene Location: 1916416-1916727 bp Feature: gene Location: 1916865-1918397 bp Ori: ARS59354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917276-1917966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 7276-1 91 7966 bp Feature: gene Location: 1918918-1936779 bp Ori: ARS59355.1 Feature: domain Description: PRK12467 Location: 1919134-1920409 bp Feature: domain Description: PRK1 2467 Location: 1 91 91 34-1 920409 bp Feature: domain Description: PRK12467 Location: 1920439-1922221 bp Feature: domain Description: PRK1 2467 Location: 1 920439-1 922221 bp Feature: domain Description: PRK12316 Location: 1922365-1925521 bp Feature: domain Description: PRK1 231 6 Location: 1 922365-1 925521 bp Feature: domain Description: PRK12467 Location: 1925554-1927141 bp Feature: domain Description: PRK1 2467 Location: 1 925554-1 9271 41 bp Feature: domain Description: PRK12467 Location: 1927366-1931626 bp Feature: domain Description: PRK1 2467 Location: 1 927366-1 931 626 bp Feature: domain Description: PP-binding Location: 1931680-1931869 bp Feature: domain Description: PP-binding Location: 1 931 680-1 931 869 bp Feature: domain Description: PRK12316 Location: 1931893-1935061 bp Feature: domain Description: PRK1 231 6 Location: 1 931 893-1 935061 bp Feature: domain Description: Thioesterase Location: 1935091-1935400 bp Feature: domain Description: Thioesterase Location: 1 935091 -1 935400 bp Feature: domain Description: entF Location: 1935901-1936306 bp Feature: domain Description: entF Location: 1 935901 -1 936306 bp Feature: gene Location: 1936779-1963820 bp Ori: ARS59356.1 Feature: domain Description: PRK12467 Location: 1936815-1938309 bp Feature: domain Description: PRK1 2467 Location: 1 93681 5-1 938309 bp Feature: domain Description: PP-binding Location: 1938627-1938822 bp Feature: domain Description: PP-binding Location: 1 938627-1 938822 bp Feature: domain Description: PKS Location: 1938906-1940157 bp Feature: domain Description: PKS Location: 1 938906-1 9401 57 bp Feature: domain Description: PKS_AT Location: 1940469-1941321 bp Feature: domain Description: PKS_AT Location: 1 940469-1 941 321 bp Feature: domain Description: PRK12467 Location: 1941630-1941861 bp Feature: domain Description: PRK1 2467 Location: 1 941 630-1 941 861 bp Feature: domain Description: HemL Location: 1942365-1943622 bp Feature: domain Description: HemL Location: 1 942365-1 943622 bp Feature: domain Description: seco_metab_LLM Location: 1943817-1944834 bp Feature: domain Description: seco_metab_LLM Location: 1 94381 7-1 944834 bp Feature: domain Description: PRK12467 Location: 1944870-1945935 bp Feature: domain Description: PRK1 2467 Location: 1 944870-1 945935 bp Feature: domain Description: PRK12467 Location: 1946010-1947747 bp Feature: domain Description: PRK1 2467 Location: 1 94601 0-1 947747 bp Feature: domain Description: PP-binding Location: 1947804-1947993 bp Feature: domain Description: PP-binding Location: 1 947804-1 947993 bp Feature: domain Description: Condensation Location: 1948047-1949376 bp Feature: domain Description: Condensation Location: 1 948047-1 949376 bp Feature: domain Description: A_NRPS_alphaAR Location: 1949478-1949724 bp Feature: domain Description: A_NRPS_alphaAR Location: 1 949478-1 949724 bp Feature: domain Description: PRK12467 Location: 1949769-1954185 bp Feature: domain Description: PRK1 2467 Location: 1 949769-1 9541 85 bp Feature: domain Description: COG4908 Location: 1954458-1954824 bp Feature: domain Description: COG4908 Location: 1 954458-1 954824 bp Feature: domain Description: EntF Location: 1955049-1956987 bp Feature: domain Description: EntF Location: 1 955049-1 956987 bp Feature: domain Description: PRK12467 Location: 1957089-1959228 bp Feature: domain Description: PRK1 2467 Location: 1 957089-1 959228 bp Feature: domain Description: PRK12467 Location: 1959249-1963791 bp Feature: domain Description: PRK1 2467 Location: 1 959249-1 963791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-GII, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), PolY_like (cd03468), COG4544 (Uncharacterized conserved protein )
MFS_MucK (cd17371), AcrR (COG1309), PRK11169 (leucine-responsive transcriptional regulator Lrp), PRK12467 (peptide synthase; Provisional), PRK12316 (peptide synthase; Provisional), PP-binding (pfam00550), Thioesterase (pfam00975), entF (PRK10252), PKS (cd00833), PKS_AT (smart00827)
HemL (COG0001), seco_metab_LLM (TIGR04020), Condensation (pfam00668), A_NRPS_alphaAR (cd17647), COG4908 (Uncharacterized protein, contains a NRPS condensation (elongation) domain ), EntF (COG3319)

Seq: CP016612.1 Ralstonia solanacearum FJAT-91 chromosome, complete genome (3873214 bp)
Overview 1 RT 1: 1318583-1324534 bp Neighborhood of RT #1 [1318583, 1324875] IS5 PRK13876 RVT-GII PRK13876 arc_metj Feature: gene Location: 1318583-1319548 bp Ori: ARS55738.1 Feature: domain Description: IS5 Location: 1318760-1319531 bp Feature: domain Description: IS5 Location: 1318760-1319531 bp Feature: gene Location: 1320491-1321567 bp Feature: domain Description: PRK13876 Location: 1320494-1321568 bp Feature: domain Description: PRK13876 Location: 132 0494-132 1568 bp Feature: gene Location: 1321933-1323465 bp Ori: ARS55739.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1322344-1323034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 2 344-132 3034 bp Feature: gene Location: 1323485-1324414 bp Feature: domain Description: PRK13876 Location: 1323488-1324412 bp Feature: domain Description: PRK13876 Location: 132 3488-132 4412 bp Feature: gene Location: 1324411-1324875 bp Ori: ARS55740.1 Feature: domain Description: arc_metj Location: 1324426-1324534 bp Feature: domain Description: arc_metj Location: 132 442 6-132 4534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), PRK13876 (conjugal transfer coupling protein TraG; Provisional), RVT-GII, arc_metj (LOAD_arc_metj)