myRT

myRT report for GCA_002157855.1_ASM215785v1

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Seq: CP020880.1 Bacillus horikoshii strain 20a chromosome, complete genome (4277585 bp)
Overview 1 RT 1: 345112-349539 bp 2 RT 2: 560959-572656 bp 3 RT 3: 3242953-3247990 bp 4 RT 4: 3256619-3262748 bp 5 RT 5: 3845153-3854403 bp Neighborhood of RT #1 [345112, 349637] Hit Nudix_Hydrolase_18 RVT-GII GIIM Aminoglyc_resit Beta-lactamase2 Neighborhood of RT #2 [560959, 572656] DEXQc_UvrD DEXQc_UvrD UvrD YbjD RVT-GII HNHc LysR RHOD_PspE2 RVT-UG14 Nudix_Hydrolase_28 Neighborhood of RT #3 [3242953, 3247990] nicotinamidase_related Beta-lactamase RVT-GII GIIM Acetyltransf_1 Neighborhood of RT #4 [3256619, 3262864] CcmA RVT-GII HNHc DUF1002 Neighborhood of RT #5 [3845153, 3854447] trans_reg_C MFS_MefA_like RVT-GII HNHc COG3547 COG3547 TniQ HTH_Hin_like HTH_Hin_like Feature: gene Location: 345112-345522 bp Ori: ART74870.1 Feature: domain Description: Hit Location: 345145-345469 bp Feature: domain Description: Hit Location: 3451 45-345469 bp Feature: gene Location: 345626-346102 bp Ori: ART74871.1 Feature: domain Description: Nudix_Hydrolase_18 Location: 345671-346061 bp Feature: domain Description: Nudix_Hydrolase_1 8 Location: 345671 -346061 bp Feature: gene Location: 346662-347990 bp Ori: ART74872.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346917-347610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34691 7-34761 0 bp Feature: domain Description: GIIM Note: maturase Location: 347700-347904 bp Feature: domain Description: GIIM Note: maturase Location: 347700-347904 bp Feature: gene Location: 348234-348857 bp Ori: ART74873.1 Feature: domain Description: Aminoglyc_resit Location: 348270-348390 bp Feature: domain Description: Aminoglyc_resit Location: 348270-348390 bp Feature: gene Location: 348879-349637 bp Ori: ART74874.1 Feature: domain Description: Beta-lactamase2 Location: 348966-349539 bp Feature: domain Description: Beta-lactamase2 Location: 348966-349539 bp Feature: gene Location: 560959-562683 bp Ori: ART75074.1 Feature: domain Description: DEXQc_UvrD Location: 560980-561271 bp Feature: domain Description: DEXQc_UvrD Location: 560980-561 271 bp Feature: domain Description: DEXQc_UvrD Location: 561430-561757 bp Feature: domain Description: DEXQc_UvrD Location: 561 430-561 757 bp Feature: domain Description: UvrD Location: 562387-562609 bp Feature: domain Description: UvrD Location: 562387-562609 bp Feature: gene Location: 562694-564568 bp Ori: ART75075.1 Feature: domain Description: YbjD Location: 562697-564557 bp Feature: domain Description: YbjD Location: 562697-564557 bp Feature: gene Location: 565651-567468 bp Ori: ART75076.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565951-566647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565951 -566647 bp Feature: domain Description: HNHc Note: nucleases Location: 567205-567346 bp Feature: domain Description: HNHc Note: nucleases Location: 567205-567346 bp Feature: gene Location: 567674-568576 bp Ori: ART75077.1 Feature: domain Description: LysR Location: 567713-568562 bp Feature: domain Description: LysR Location: 56771 3-568562 bp Feature: gene Location: 568678-569127 bp Ori: ART75078.1 Feature: domain Description: RHOD_PspE2 Location: 568750-569071 bp Feature: domain Description: RHOD_PspE2 Location: 568750-569071 bp Feature: gene Location: 569597-571141 bp Ori: ART75079.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 569948-570305 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 569948-570305 bp Feature: gene Location: 571343-571807 bp Ori: ART75080.1 Feature: domain Description: Nudix_Hydrolase_28 Location: 571361-571739 bp Feature: domain Description: Nudix_Hydrolase_28 Location: 571 361 -571 739 bp Feature: gene Location: 572134-572656 bp Feature: gene Location: 3242953-3243477 bp Ori: ART78667.1 Feature: domain Description: nicotinamidase_related Location: 3242968-3243412 bp Feature: domain Description: nicotinamidase_related Location: 3242968-324341 2 bp Feature: gene Location: 3243664-3244755 bp Ori: ART77582.1 Feature: domain Description: Beta-lactamase Location: 3243688-3244699 bp Feature: domain Description: Beta-lactamase Location: 3243688-3244699 bp Feature: gene Location: 3245021-3246349 bp Ori: ART77583.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3245276-3245969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3245276-3245969 bp Feature: domain Description: GIIM Note: maturase Location: 3246059-3246263 bp Feature: domain Description: GIIM Note: maturase Location: 3246059-3246263 bp Feature: gene Location: 3246879-3247466 bp Ori: ART77584.1 Feature: domain Description: Acetyltransf_1 Location: 3246993-3247233 bp Feature: domain Description: Acetyltransf_1 Location: 3246993-3247233 bp Feature: gene Location: 3247547-3247990 bp Feature: gene Location: 3256619-3257521 bp Ori: ART77595.1 Feature: domain Description: CcmA Location: 3256625-3257447 bp Feature: domain Description: CcmA Location: 3256625-3257447 bp Feature: gene Location: 3258510-3258649 bp Feature: gene Location: 3259129-3260946 bp Ori: ART77596.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3259429-3260125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3259429-32601 25 bp Feature: domain Description: HNHc Note: nucleases Location: 3260683-3260824 bp Feature: domain Description: HNHc Note: nucleases Location: 3260683-3260824 bp Feature: gene Location: 3261775-3261957 bp Feature: gene Location: 3261950-3262864 bp Ori: ART77598.1 Feature: domain Description: DUF1002 Location: 3262091-3262748 bp Feature: domain Description: DUF1 002 Location: 3262091 -3262748 bp Feature: gene Location: 3845153-3846283 bp Ori: ART78107.1 Feature: domain Description: trans_reg_C Location: 3845174-3845423 bp Feature: domain Description: trans_reg_C Location: 38451 74-3845423 bp Feature: gene Location: 3846352-3847635 bp Ori: ART78108.1 Feature: domain Description: MFS_MefA_like Location: 3846403-3847567 bp Feature: domain Description: MFS_MefA_like Location: 3846403-3847567 bp Feature: gene Location: 3847946-3849763 bp Ori: ART78109.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3848246-3848942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3848246-3848942 bp Feature: domain Description: HNHc Note: nucleases Location: 3849500-3849641 bp Feature: domain Description: HNHc Note: nucleases Location: 3849500-3849641 bp Feature: gene Location: 3851048-3852334 bp Ori: ART78110.1 Feature: domain Description: COG3547 Location: 3851102-3851789 bp Feature: domain Description: COG3547 Location: 3851 1 02-3851 789 bp Feature: domain Description: COG3547 Location: 3851813-3852131 bp Feature: domain Description: COG3547 Location: 3851 81 3-38521 31 bp Feature: gene Location: 3852489-3854447 bp Ori: ART78111.1 Feature: domain Description: TniQ Location: 3852504-3852930 bp Feature: domain Description: TniQ Location: 3852504-3852930 bp Feature: domain Description: HTH_Hin_like Location: 3853590-3853641 bp Feature: domain Description: HTH_Hin_like Location: 3853590-3853641 bp Feature: domain Description: HTH_Hin_like Location: 3854313-3854403 bp Feature: domain Description: HTH_Hin_like Location: 385431 3-3854403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hit (COG0537), Nudix_Hydrolase_18 (cd04677), RVT-GII, GIIM (pfam08388), Aminoglyc_resit (pfam10706), Beta-lactamase2 (pfam13354), DEXQc_UvrD (cd17932), UvrD (COG0210), YbjD (COG3593), HNHc (smart00507)
LysR (COG0583), RHOD_PspE2 (cd01521), RVT-UG14, Nudix_Hydrolase_28 (cd04687), nicotinamidase_related (cd01014), Beta-lactamase (pfam00144), Acetyltransf_1 (pfam00583), CcmA (COG4133), DUF1002 (pfam06207), trans_reg_C (cd00383)
MFS_MefA_like (cd06173), COG3547 (Transposase ), TniQ (pfam06527), HTH_Hin_like (cd00569)