myRT

myRT report for GCA_002162015.1_ASM216201v1

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Seq: CP021448.1 Ralstonia solanacearum strain SEPPX05 chromosome, complete genome (3930849 bp)
Overview 1 RT 1: 484976-491391 bp 2 RT 2: 719474-723332 bp 3 RT 3: 1549854-1554378 bp 4 RT 4: 3200104-3204581 bp Neighborhood of RT #1 [484976, 491423] COG4584 IS5 RVT-GII GIIM ChtBD2 Neighborhood of RT #2 [719474, 723454] HDAC_classIV IS5 RVT-GII GIIM IS5 Neighborhood of RT #3 [1549854, 1554404] IS5 RVT-GII GIIM COG4584 PRK09183 Neighborhood of RT #4 [3200104, 3204607] PRK12606 RVT-GII GIIM COG4584 PRK09183 Feature: gene Location: 484976-485971 bp Ori: ARU20924.1 Feature: domain Description: COG4584 Location: 484979-485816 bp Feature: domain Description: COG4584 Location: 484979-48581 6 bp Feature: gene Location: 486153-486602 bp Ori: ARU20925.1 Gene: envZ Feature: domain Description: IS5 Location: 486156-486585 bp Feature: domain Description: IS5 Location: 4861 56-486585 bp Feature: gene Location: 486688-487932 bp Ori: ARU20926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486892-487549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486892-487549 bp Feature: domain Description: GIIM Note: maturase Location: 487630-487846 bp Feature: domain Description: GIIM Note: maturase Location: 487630-487846 bp Feature: gene Location: 488306-490357 bp Feature: gene Location: 491049-491423 bp Ori: ARU20928.1 Gene: mfd Feature: domain Description: ChtBD2 Location: 491214-491391 bp Feature: domain Description: ChtBD2 Location: 491 21 4-491 391 bp Feature: gene Location: 719474-720439 bp Ori: ARU21161.1 Feature: domain Description: HDAC_classIV Location: 719525-720350 bp Feature: domain Description: HDAC_classIV Location: 71 9525-720350 bp Feature: gene Location: 720639-721088 bp Ori: ARU21162.1 Gene: livK Feature: domain Description: IS5 Location: 720642-721071 bp Feature: domain Description: IS5 Location: 720642-721 071 bp Feature: gene Location: 721174-722418 bp Ori: ARU21163.1 Gene: gidA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721378-722035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721 378-722035 bp Feature: domain Description: GIIM Note: maturase Location: 722116-722332 bp Feature: domain Description: GIIM Note: maturase Location: 7221 1 6-722332 bp Feature: gene Location: 722792-723454 bp Ori: ARU21164.1 Gene: gidB Feature: domain Description: IS5 Location: 722969-723332 bp Feature: domain Description: IS5 Location: 722969-723332 bp Feature: gene Location: 1549854-1550081 bp Feature: gene Location: 1550209-1550871 bp Ori: ARU21949.1 Feature: domain Description: IS5 Location: 1550386-1550749 bp Feature: domain Description: IS5 Location: 1 550386-1 550749 bp Feature: gene Location: 1551245-1552489 bp Ori: ARU21950.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1551449-1552106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 551 449-1 5521 06 bp Feature: domain Description: GIIM Note: maturase Location: 1552187-1552403 bp Feature: domain Description: GIIM Note: maturase Location: 1 5521 87-1 552403 bp Feature: gene Location: 1552624-1553619 bp Ori: ARU21951.1 Feature: domain Description: COG4584 Location: 1552627-1553464 bp Feature: domain Description: COG4584 Location: 1 552627-1 553464 bp Feature: gene Location: 1553616-1554404 bp Ori: ARU21952.1 Feature: domain Description: PRK09183 Location: 1553619-1554378 bp Feature: domain Description: PRK091 83 Location: 1 55361 9-1 554378 bp Feature: gene Location: 3200104-3200733 bp Ori: ARU23505.1 Feature: domain Description: PRK12606 Location: 3200155-3200728 bp Feature: domain Description: PRK1 2606 Location: 32001 55-3200728 bp Feature: gene Location: 3200931-3201125 bp Feature: gene Location: 3201225-3202469 bp Ori: ARU23507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3201429-3202086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3201 429-3202086 bp Feature: domain Description: GIIM Note: maturase Location: 3202167-3202383 bp Feature: domain Description: GIIM Note: maturase Location: 32021 67-3202383 bp Feature: gene Location: 3202827-3203822 bp Ori: ARU23508.1 Feature: domain Description: COG4584 Location: 3202830-3203667 bp Feature: domain Description: COG4584 Location: 3202830-3203667 bp Feature: gene Location: 3203819-3204607 bp Ori: ARU23509.1 Feature: domain Description: PRK09183 Location: 3203822-3204581 bp Feature: domain Description: PRK091 83 Location: 3203822-3204581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ChtBD2 (smart00494), HDAC_classIV (cd09993), PRK09183 (transposase/IS protein; Provisional), PRK12606 (GTP cyclohydrolase I; Reviewed)

Seq: CP021449.1 Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence (2066085 bp)
Overview 1 RT 1: 165631-172537 bp 2 RT 2: 804482-809056 bp 3 RT 3: 907203-912179 bp 4 RT 4: 1307632-1312294 bp 5 RT 5: 1358679-1365748 bp Neighborhood of RT #1 [165631, 172551] DUF2242 IS5 RVT-GII GIIM IS5 NERD UvrD Neighborhood of RT #2 [804482, 809106] COG4584 PRK09183 RVT-GII GIIM IS5 gpV Neighborhood of RT #3 [907203, 912179] PRK09409 IS5 RVT-GII GIIM IS5 Neighborhood of RT #4 [1307632, 1312425] IS5 RVT-GII GIIM IS5 DEDD_Tnp_IS110 HHH_5 Transposase_20 Neighborhood of RT #5 [1358679, 1365903] VgrG COG4253 IS5 RVT-GII GIIM PRK09183 COG4584 Feature: gene Location: 165631-166452 bp Ori: ARU24345.1 Feature: domain Description: DUF2242 Location: 165802-166162 bp Feature: domain Description: DUF2 2 42 Location: 165802 -166162 bp Feature: gene Location: 167617-168279 bp Ori: ARU24346.1 Feature: domain Description: IS5 Location: 167794-168157 bp Feature: domain Description: IS5 Location: 167794-168157 bp Feature: gene Location: 168653-169897 bp Ori: ARU24347.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168857-169514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168857-169514 bp Feature: domain Description: GIIM Note: maturase Location: 169595-169811 bp Feature: domain Description: GIIM Note: maturase Location: 169595-169811 bp Feature: gene Location: 169983-170432 bp Ori: ARU24348.1 Feature: domain Description: IS5 Location: 169986-170415 bp Feature: domain Description: IS5 Location: 169986-170415 bp Feature: gene Location: 170755-172551 bp Ori: ARU24349.1 Feature: domain Description: NERD Location: 170764-171043 bp Feature: domain Description: NERD Location: 170764-171043 bp Feature: domain Description: UvrD Location: 171343-172537 bp Feature: domain Description: UvrD Location: 171343-172 537 bp Feature: gene Location: 804482-805477 bp Ori: ARU24876.1 Feature: domain Description: COG4584 Location: 804485-805322 bp Feature: domain Description: COG4584 Location: 804485-80532 2 bp Feature: gene Location: 805474-806262 bp Ori: ARU24877.1 Feature: domain Description: PRK09183 Location: 805477-806236 bp Feature: domain Description: PRK09183 Location: 805477-8062 36 bp Feature: gene Location: 806585-807829 bp Ori: ARU24878.1 Gene: aspB Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806789-807446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806789-807446 bp Feature: domain Description: GIIM Note: maturase Location: 807527-807743 bp Feature: domain Description: GIIM Note: maturase Location: 80752 7-807743 bp Feature: gene Location: 807915-808364 bp Ori: ARU24879.1 Gene: ligK Feature: domain Description: IS5 Location: 807918-808347 bp Feature: domain Description: IS5 Location: 807918-808347 bp Feature: gene Location: 808507-809106 bp Ori: ARU24880.1 Feature: domain Description: gpV Location: 808537-809056 bp Feature: domain Description: gpV Location: 808537-809056 bp Feature: gene Location: 907203-908039 bp Ori: ARU24977.1 Feature: domain Description: PRK09409 Location: 907215-908028 bp Feature: domain Description: PRK09409 Location: 9072 15-90802 8 bp Feature: gene Location: 908932-909381 bp Ori: ARU24978.1 Feature: domain Description: IS5 Location: 908935-909364 bp Feature: domain Description: IS5 Location: 908935-909364 bp Feature: gene Location: 909467-910711 bp Ori: ARU24979.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909671-910328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909671-91032 8 bp Feature: domain Description: GIIM Note: maturase Location: 910409-910625 bp Feature: domain Description: GIIM Note: maturase Location: 910409-91062 5 bp Feature: gene Location: 911085-911747 bp Ori: ARU24980.1 Feature: domain Description: IS5 Location: 911262-911625 bp Feature: domain Description: IS5 Location: 9112 62 -91162 5 bp Feature: gene Location: 912027-912179 bp Feature: gene Location: 1307632-1307838 bp Feature: gene Location: 1307958-1308620 bp Ori: ARU25323.1 Feature: domain Description: IS5 Location: 1308135-1308498 bp Feature: domain Description: IS5 Location: 1308135-1308498 bp Feature: gene Location: 1308994-1310238 bp Ori: ARU25324.1 Gene: coxB Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1309198-1309855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1309198-1309855 bp Feature: domain Description: GIIM Note: maturase Location: 1309936-1310152 bp Feature: domain Description: GIIM Note: maturase Location: 1309936-1310152 bp Feature: gene Location: 1310324-1310773 bp Ori: ARU25325.1 Gene: coxA Feature: domain Description: IS5 Location: 1310327-1310756 bp Feature: domain Description: IS5 Location: 131032 7-1310756 bp Feature: gene Location: 1311163-1312425 bp Ori: ARU25326.1 Gene: coxC Feature: domain Description: DEDD_Tnp_IS110 Location: 1311262-1311724 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 13112 62 -131172 4 bp Feature: domain Description: HHH_5 Location: 1311769-1311904 bp Feature: domain Description: HHH_5 Location: 1311769-1311904 bp Feature: domain Description: Transposase_20 Location: 1312048-1312294 bp Feature: domain Description: Transposase_2 0 Location: 1312 048-1312 2 94 bp Feature: gene Location: 1358679-1361399 bp Ori: ARU25362.1 Feature: domain Description: VgrG Location: 1358760-1360524 bp Feature: domain Description: VgrG Location: 1358760-136052 4 bp Feature: domain Description: COG4253 Location: 1360557-1361376 bp Feature: domain Description: COG42 53 Location: 1360557-1361376 bp Feature: gene Location: 1362021-1362470 bp Ori: ARU25363.1 Feature: domain Description: IS5 Location: 1362024-1362453 bp Feature: domain Description: IS5 Location: 1362 02 4-1362 453 bp Feature: gene Location: 1362556-1363800 bp Ori: ARU25364.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1362760-1363417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1362 760-1363417 bp Feature: domain Description: GIIM Note: maturase Location: 1363498-1363714 bp Feature: domain Description: GIIM Note: maturase Location: 1363498-1363714 bp Feature: gene Location: 1364123-1364911 bp Ori: ARU25365.1 Feature: domain Description: PRK09183 Location: 1364126-1364885 bp Feature: domain Description: PRK09183 Location: 136412 6-1364885 bp Feature: gene Location: 1364908-1365903 bp Ori: ARU25366.1 Feature: domain Description: COG4584 Location: 1364911-1365748 bp Feature: domain Description: COG4584 Location: 1364911-1365748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2242 (pfam10001), IS5 (COG3039), RVT-GII, GIIM (pfam08388), NERD (pfam08378), UvrD (COG0210), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), gpV (COG4540), PRK09409 (IS2 transposase TnpB; Reviewed)
DEDD_Tnp_IS110 (pfam01548), HHH_5 (pfam14520), Transposase_20 (pfam02371), VgrG (COG3501), COG4253 (Uncharacterized conserved protein, DUF2345 family )