myRT

myRT report for GCA_002164595.2_ASM216459v2

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Seq: CP032877.1 Escherichia coli strain WCHEC000837 plasmid pCTXM15_000837, complete sequence (150853 bp)
Overview 1 RT 1: 3613-8311 bp 2 RT 2: 147666-150221 bp Neighborhood of RT #1 [3613, 8311] PRK09738 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [147666, 150256] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3613-4502 bp Feature: gene Location: 4602-4760 bp Ori: AYL08198.1 Feature: domain Description: PRK09738 Location: 4605-4758 bp Feature: domain Description: PRK09738 Location: 4605-4758 bp Feature: gene Location: 5155-6822 bp Ori: AYL08199.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5203-5440 bp Feature: domain Description: RVT_N Location: 5203-5440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5491-6133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5491 -61 33 bp Feature: domain Description: GIIM Note: maturase Location: 6184-6418 bp Feature: domain Description: GIIM Note: maturase Location: 61 84-641 8 bp Feature: domain Description: HNHc Note: nucleases Location: 6628-6787 bp Feature: domain Description: HNHc Note: nucleases Location: 6628-6787 bp Feature: gene Location: 7724-7960 bp Feature: gene Location: 8024-8311 bp Feature: gene Location: 147666-148088 bp Ori: AYL08339.1 Feature: domain Description: DUF1380 Location: 147669-147963 bp Feature: domain Description: DUF1 380 Location: 1 47669-1 47963 bp Feature: gene Location: 148085-148276 bp Feature: gene Location: 148589-150256 bp Ori: AYL08341.1 Gene: ltrA Feature: domain Description: RVT_N Location: 148637-148874 bp Feature: domain Description: RVT_N Location: 1 48637-1 48874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148925-149567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48925-1 49567 bp Feature: domain Description: GIIM Note: maturase Location: 149618-149852 bp Feature: domain Description: GIIM Note: maturase Location: 1 4961 8-1 49852 bp Feature: domain Description: HNHc Note: nucleases Location: 150062-150221 bp Feature: domain Description: HNHc Note: nucleases Location: 1 50062-1 50221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CP032879.1 Escherichia coli strain WCHEC000837 chromosome, complete genome (5094619 bp)
Overview 1 RT 1: 3343434-3347725 bp 2 RT 2: 3373220-3376779 bp 3 RT 3: 3536615-3540226 bp 4 RT 4: 3992258-3998152 bp Neighborhood of RT #1 [3343434, 3347725] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [3373220, 3376804] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [3536615, 3540393] InsE RVT-GII GIIM PHA02517 COG2085 Neighborhood of RT #4 [3992258, 3998289] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 3343434-3344663 bp Ori: AYL13076.1 Feature: domain Description: YesM Location: 3343914-3344655 bp Feature: domain Description: YesM Location: 3343914-3344655 bp Feature: gene Location: 3344736-3344924 bp Feature: gene Location: 3345246-3345767 bp Ori: AYL11386.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3345252-3345534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33452 52 -3345534 bp Feature: domain Description: GIIM Note: maturase Location: 3345582-3345762 bp Feature: domain Description: GIIM Note: maturase Location: 3345582 -3345762 bp Feature: gene Location: 3345943-3346334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3346273-3346333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33462 73-3346333 bp Feature: gene Location: 3346559-3346846 bp Feature: gene Location: 3346820-3347725 bp Feature: gene Location: 3373220-3373603 bp Feature: domain Description: PHA02517 Location: 3373250-3373604 bp Feature: domain Description: PHA02 517 Location: 33732 50-3373604 bp Feature: gene Location: 3373596-3373967 bp Feature: gene Location: 3374263-3375786 bp Ori: AYL11414.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3374536-3375268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3374536-33752 68 bp Feature: domain Description: GIIM Note: maturase Location: 3375343-3375541 bp Feature: domain Description: GIIM Note: maturase Location: 3375343-3375541 bp Feature: gene Location: 3375876-3376349 bp Feature: domain Description: PHA02517 Location: 3375882-3376347 bp Feature: domain Description: PHA02 517 Location: 3375882 -3376347 bp Feature: gene Location: 3376485-3376804 bp Feature: domain Description: InsE Location: 3376494-3376779 bp Feature: domain Description: InsE Location: 3376494-3376779 bp Feature: gene Location: 3536615-3537302 bp Feature: domain Description: InsE Location: 3536624-3536873 bp Feature: domain Description: InsE Location: 353662 4-3536873 bp Feature: gene Location: 3537298-3537666 bp Feature: gene Location: 3537962-3539485 bp Ori: AYL11563.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3538235-3538967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35382 35-3538967 bp Feature: domain Description: GIIM Note: maturase Location: 3539042-3539240 bp Feature: domain Description: GIIM Note: maturase Location: 3539042 -35392 40 bp Feature: gene Location: 3539566-3540053 bp Feature: domain Description: PHA02517 Location: 3539569-3539740 bp Feature: domain Description: PHA02 517 Location: 3539569-3539740 bp Feature: gene Location: 3539980-3540393 bp Ori: AYL11564.1 Feature: domain Description: COG2085 Location: 3540079-3540226 bp Feature: domain Description: COG2 085 Location: 3540079-35402 2 6 bp Feature: gene Location: 3992258-3992728 bp Feature: gene Location: 3992774-3992914 bp Ori: AYL11963.1 Feature: domain Description: Phage_ASH Location: 3992801-3992894 bp Feature: domain Description: Phage_ASH Location: 3992 801-3992 894 bp Feature: gene Location: 3993075-3996284 bp Ori: AYL11964.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3993603-3994092 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3993603-3994092 bp Feature: domain Description: nitrilase Location: 3995598-3996195 bp Feature: domain Description: nitrilase Location: 3995598-3996195 bp Feature: gene Location: 3996579-3997382 bp Ori: AYL11965.1 Feature: domain Description: AbiEi_3_N Location: 3996612-3996873 bp Feature: domain Description: AbiEi_3_N Location: 3996612 -3996873 bp Feature: domain Description: AbiEi_3 Location: 3996885-3997341 bp Feature: domain Description: AbiEi_3 Location: 3996885-3997341 bp Feature: gene Location: 3997369-3998289 bp Ori: AYL11966.1 Feature: domain Description: AbiEii Location: 3997411-3998152 bp Feature: domain Description: AbiEii Location: 3997411-3998152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2085 (Predicted dinucleotide-binding enzyme ), Phage_ASH (pfam10554), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194)
AbiEi_3 (pfam11459), AbiEii (pfam08843)