myRT

myRT report for GCA_002164635.4_ASM216463v4

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Seq: CP022229.3 Escherichia coli strain WCHEC96200 chromosome, complete genome (5051470 bp)
Overview 1 RT 1: 2515306-2519597 bp 2 RT 2: 2545092-2548651 bp 3 RT 3: 2708487-2712265 bp 4 RT 4: 3164142-3170036 bp Neighborhood of RT #1 [2515306, 2519597] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [2545092, 2548676] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [2708487, 2712265] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3164142, 3170173] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 2515306-2516535 bp Ori: AXN85570.1 Feature: domain Description: YesM Location: 2515786-2516527 bp Feature: domain Description: YesM Location: 251 5786-251 6527 bp Feature: gene Location: 2516608-2516796 bp Feature: gene Location: 2517118-2517639 bp Ori: AXN85568.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2517124-2517406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 71 24-251 7406 bp Feature: domain Description: GIIM Note: maturase Location: 2517454-2517634 bp Feature: domain Description: GIIM Note: maturase Location: 251 7454-251 7634 bp Feature: gene Location: 2517815-2518206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2518145-2518205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 81 45-251 8205 bp Feature: gene Location: 2518431-2518718 bp Feature: gene Location: 2518692-2519597 bp Feature: gene Location: 2545092-2545475 bp Feature: domain Description: PHA02517 Location: 2545122-2545476 bp Feature: domain Description: PHA0251 7 Location: 25451 22-2545476 bp Feature: gene Location: 2545468-2545839 bp Feature: gene Location: 2546150-2547658 bp Ori: AXN85541.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2546408-2547140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2546408-25471 40 bp Feature: domain Description: GIIM Note: maturase Location: 2547215-2547413 bp Feature: domain Description: GIIM Note: maturase Location: 254721 5-254741 3 bp Feature: gene Location: 2547748-2548221 bp Feature: domain Description: PHA02517 Location: 2547754-2548219 bp Feature: domain Description: PHA0251 7 Location: 2547754-254821 9 bp Feature: gene Location: 2548357-2548676 bp Feature: domain Description: InsE Location: 2548366-2548651 bp Feature: domain Description: InsE Location: 2548366-2548651 bp Feature: gene Location: 2708487-2709174 bp Feature: domain Description: InsE Location: 2708496-2708745 bp Feature: domain Description: InsE Location: 2708496-2708745 bp Feature: gene Location: 2709170-2709538 bp Feature: gene Location: 2709849-2711357 bp Ori: AXN85387.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2710107-2710839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 01 07-271 0839 bp Feature: domain Description: GIIM Note: maturase Location: 2710914-2711112 bp Feature: domain Description: GIIM Note: maturase Location: 271 091 4-271 1 1 1 2 bp Feature: gene Location: 2711438-2711925 bp Feature: domain Description: PHA02517 Location: 2711441-2711612 bp Feature: domain Description: PHA0251 7 Location: 271 1 441 -271 1 61 2 bp Feature: gene Location: 2712008-2712265 bp Feature: gene Location: 3164142-3164612 bp Feature: gene Location: 3164658-3164798 bp Ori: AXN84980.1 Feature: domain Description: Phage_ASH Location: 3164685-3164778 bp Feature: domain Description: Phage_ASH Location: 31 64685-31 64778 bp Feature: gene Location: 3164959-3168168 bp Ori: AXN84979.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3165487-3165976 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31 65487-31 65976 bp Feature: domain Description: nitrilase Location: 3167482-3168079 bp Feature: domain Description: nitrilase Location: 31 67482-31 68079 bp Feature: gene Location: 3168463-3169266 bp Ori: AXN84978.1 Feature: domain Description: AbiEi_3_N Location: 3168496-3168757 bp Feature: domain Description: AbiEi_3_N Location: 31 68496-31 68757 bp Feature: domain Description: AbiEi_3 Location: 3168769-3169225 bp Feature: domain Description: AbiEi_3 Location: 31 68769-31 69225 bp Feature: gene Location: 3169253-3170173 bp Ori: AXN84977.1 Feature: domain Description: AbiEii Location: 3169295-3170036 bp Feature: domain Description: AbiEii Location: 31 69295-31 70036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), Phage_ASH (pfam10554), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459)
AbiEii (pfam08843)

Seq: CP022227.3 Escherichia coli strain WCHEC96200 plasmid pCTXM15_000200, complete sequence (150853 bp)
Overview 1 RT 1: 124607-135686 bp Neighborhood of RT #1 [124607, 135686] RVT_N RVT-GII GIIM HNHc PRK09738 HTH_28 HTH_28 PRK13732 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 124607-124894 bp Feature: gene Location: 124958-125194 bp Feature: gene Location: 126096-127763 bp Ori: AXN83073.1 Gene: ltrA Feature: domain Description: RVT_N Location: 126144-126381 bp Feature: domain Description: RVT_N Location: 12 6144-12 6381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126432-127074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 6432 -12 7074 bp Feature: domain Description: GIIM Note: maturase Location: 127125-127359 bp Feature: domain Description: GIIM Note: maturase Location: 12 712 5-12 7359 bp Feature: domain Description: HNHc Note: nucleases Location: 127569-127728 bp Feature: domain Description: HNHc Note: nucleases Location: 12 7569-12 772 8 bp Feature: gene Location: 128158-128316 bp Ori: AXN83074.1 Feature: domain Description: PRK09738 Location: 128161-128314 bp Feature: domain Description: PRK09738 Location: 12 8161-12 8314 bp Feature: gene Location: 129305-129785 bp Ori: AXN83075.1 Feature: domain Description: HTH_28 Location: 129335-129485 bp Feature: domain Description: HTH_2 8 Location: 12 9335-12 9485 bp Feature: domain Description: HTH_28 Location: 129509-129647 bp Feature: domain Description: HTH_2 8 Location: 12 9509-12 9647 bp Feature: gene Location: 131773-132312 bp Ori: AXN83079.1 Feature: domain Description: PRK13732 Location: 131776-132310 bp Feature: domain Description: PRK13732 Location: 131776-132 310 bp Feature: gene Location: 132338-132544 bp Feature: gene Location: 133515-135182 bp Ori: AXN83080.1 Gene: ltrA Feature: domain Description: RVT_N Location: 133563-133800 bp Feature: domain Description: RVT_N Location: 133563-133800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133851-134493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133851-134493 bp Feature: domain Description: GIIM Note: maturase Location: 134544-134778 bp Feature: domain Description: GIIM Note: maturase Location: 134544-134778 bp Feature: domain Description: HNHc Note: nucleases Location: 134988-135147 bp Feature: domain Description: HNHc Note: nucleases Location: 134988-135147 bp Feature: gene Location: 135340-135525 bp Feature: gene Location: 135495-135686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional), HTH_28 (pfam13518), PRK13732 (single-stranded DNA-binding protein; Provisional)