myRT

myRT report for GCA_002164645.3_ASM216464v3

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Seq: CP028587.1 Escherichia coli strain WCHEC4533 plasmid pCTXM15_000533, complete sequence (150853 bp)
Overview 1 RT 1: 124607-135686 bp Neighborhood of RT #1 [124607, 135686] RVT_N RVT-GII GIIM HNHc PRK09738 HTH_28 HTH_28 PRK13732 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 124607-124894 bp Feature: gene Location: 124958-125194 bp Feature: gene Location: 126096-127763 bp Ori: AWA14640.1 Gene: ltrA Feature: domain Description: RVT_N Location: 126144-126381 bp Feature: domain Description: RVT_N Location: 1 261 44-1 26381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126432-127074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26432-1 27074 bp Feature: domain Description: GIIM Note: maturase Location: 127125-127359 bp Feature: domain Description: GIIM Note: maturase Location: 1 271 25-1 27359 bp Feature: domain Description: HNHc Note: nucleases Location: 127569-127728 bp Feature: domain Description: HNHc Note: nucleases Location: 1 27569-1 27728 bp Feature: gene Location: 128158-128316 bp Ori: AWA14641.1 Feature: domain Description: PRK09738 Location: 128161-128314 bp Feature: domain Description: PRK09738 Location: 1 281 61 -1 2831 4 bp Feature: gene Location: 129305-129785 bp Ori: AWA14642.1 Feature: domain Description: HTH_28 Location: 129335-129485 bp Feature: domain Description: HTH_28 Location: 1 29335-1 29485 bp Feature: domain Description: HTH_28 Location: 129509-129647 bp Feature: domain Description: HTH_28 Location: 1 29509-1 29647 bp Feature: gene Location: 131773-132312 bp Ori: AWA14646.1 Feature: domain Description: PRK13732 Location: 131776-132310 bp Feature: domain Description: PRK1 3732 Location: 1 31 776-1 3231 0 bp Feature: gene Location: 132338-132544 bp Feature: gene Location: 133515-135182 bp Ori: AWA14647.1 Gene: ltrA Feature: domain Description: RVT_N Location: 133563-133800 bp Feature: domain Description: RVT_N Location: 1 33563-1 33800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133851-134493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33851 -1 34493 bp Feature: domain Description: GIIM Note: maturase Location: 134544-134778 bp Feature: domain Description: GIIM Note: maturase Location: 1 34544-1 34778 bp Feature: domain Description: HNHc Note: nucleases Location: 134988-135147 bp Feature: domain Description: HNHc Note: nucleases Location: 1 34988-1 351 47 bp Feature: gene Location: 135340-135525 bp Feature: gene Location: 135495-135686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional), HTH_28 (pfam13518), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: CP028589.2 Escherichia coli strain WCHEC4533 chromosome, complete genome (5099810 bp)
Overview 1 RT 1: 3922759-3928790 bp 2 RT 2: 4380685-4384032 bp 3 RT 3: 4544272-4547855 bp 4 RT 4: 4573349-4577632 bp Neighborhood of RT #1 [3922759, 3928790] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Neighborhood of RT #2 [4380685, 4384461] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [4544272, 4547854] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [4573349, 4577640] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 3922759-3923679 bp Ori: AWA18322.1 Feature: domain Description: AbiEii Location: 3922801-3923542 bp Feature: domain Description: AbiEii Location: 392 2 801-392 3542 bp Feature: gene Location: 3923666-3924469 bp Ori: AWA18323.1 Feature: domain Description: AbiEi_3_N Location: 3923699-3923960 bp Feature: domain Description: AbiEi_3_N Location: 392 3699-392 3960 bp Feature: domain Description: AbiEi_3 Location: 3923972-3924428 bp Feature: domain Description: AbiEi_3 Location: 392 3972 -392 442 8 bp Feature: gene Location: 3924764-3927973 bp Ori: AWA18324.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3925292-3925781 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 392 52 92 -392 5781 bp Feature: domain Description: nitrilase Location: 3927287-3927884 bp Feature: domain Description: nitrilase Location: 392 72 87-392 7884 bp Feature: gene Location: 3928134-3928274 bp Ori: AWA18325.1 Feature: domain Description: Phage_ASH Location: 3928161-3928254 bp Feature: domain Description: Phage_ASH Location: 392 8161-392 82 54 bp Feature: gene Location: 3928320-3928790 bp Feature: gene Location: 4380685-4380942 bp Feature: gene Location: 4381025-4381512 bp Feature: domain Description: PHA02517 Location: 4381028-4381199 bp Feature: domain Description: PHA02 517 Location: 438102 8-4381199 bp Feature: gene Location: 4381593-4383101 bp Ori: AWA18733.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381851-4382583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381851-4382 583 bp Feature: domain Description: GIIM Note: maturase Location: 4382658-4382856 bp Feature: domain Description: GIIM Note: maturase Location: 4382 658-4382 856 bp Feature: gene Location: 4383410-4383778 bp Feature: gene Location: 4383774-4384461 bp Feature: domain Description: InsE Location: 4383783-4384032 bp Feature: domain Description: InsE Location: 4383783-4384032 bp Feature: gene Location: 4544272-4544622 bp Ori: AWA18885.1 Feature: domain Description: InsE Location: 4544281-4544566 bp Feature: domain Description: InsE Location: 45442 81-4544566 bp Feature: gene Location: 4544727-4545200 bp Feature: domain Description: PHA02517 Location: 4544733-4545198 bp Feature: domain Description: PHA02 517 Location: 4544733-4545198 bp Feature: gene Location: 4545290-4546798 bp Ori: AWA18886.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4545548-4546280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4545548-45462 80 bp Feature: domain Description: GIIM Note: maturase Location: 4546355-4546553 bp Feature: domain Description: GIIM Note: maturase Location: 4546355-4546553 bp Feature: gene Location: 4547107-4547478 bp Feature: gene Location: 4547471-4547854 bp Feature: domain Description: PHA02517 Location: 4547501-4547855 bp Feature: domain Description: PHA02 517 Location: 4547501-4547855 bp Feature: gene Location: 4573349-4574254 bp Feature: gene Location: 4574228-4574515 bp Feature: gene Location: 4574740-4575131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4575070-4575130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4575070-4575130 bp Feature: gene Location: 4575307-4575828 bp Ori: AWA18913.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4575313-4575595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4575313-4575595 bp Feature: domain Description: GIIM Note: maturase Location: 4575643-4575823 bp Feature: domain Description: GIIM Note: maturase Location: 4575643-457582 3 bp Feature: gene Location: 4576150-4576338 bp Feature: gene Location: 4576411-4577640 bp Ori: AWA19568.1 Feature: domain Description: YesM Location: 4576891-4577632 bp Feature: domain Description: YesM Location: 4576891-4577632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)
YesM (COG2972)