myRT

myRT report for GCA_002164835.3_ASM216483v3

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Seq: CP028541.2 Klebsiella pneumoniae strain WCHKP2 plasmid pKPC2_020002, complete sequence (177516 bp)
Overview 1 RT 1: 25767-29988 bp 2 RT 2: 111399-115481 bp Neighborhood of RT #1 [25767, 29988] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [111399, 115618] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 25767-26189 bp Ori: AVZ92786.1 Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: domain Description: DUF1 380 Location: 25770-26064 bp Feature: gene Location: 26186-26377 bp Feature: gene Location: 26691-28358 bp Ori: AVZ92788.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: HNHc Note: nucleases Location: 28164-28323 bp Feature: domain Description: HNHc Note: nucleases Location: 281 64-28323 bp Feature: gene Location: 29238-29495 bp Feature: gene Location: 29758-29988 bp Feature: gene Location: 111399-111830 bp Ori: AVZ92875.1 Feature: domain Description: PRK10276 Location: 111450-111813 bp Feature: domain Description: PRK1 0276 Location: 1 1 1 450-1 1 1 81 3 bp Feature: gene Location: 111989-112240 bp Feature: gene Location: 112240-113724 bp Ori: AWT57759.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112642-113332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2642-1 1 3332 bp Feature: gene Location: 113973-114944 bp Ori: AVZ92876.1 Feature: domain Description: StbA Location: 113976-114921 bp Feature: domain Description: StbA Location: 1 1 3976-1 1 4921 bp Feature: gene Location: 114947-115618 bp Ori: AVZ92877.1 Feature: domain Description: Plasmid_stab_B Location: 114962-115169 bp Feature: domain Description: Plasmid_stab_B Location: 1 1 4962-1 1 51 69 bp Feature: domain Description: Plasmid_stab_B Location: 115274-115481 bp Feature: domain Description: Plasmid_stab_B Location: 1 1 5274-1 1 5481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP028542.2 Klebsiella pneumoniae strain WCHKP2 chromosome, complete genome (5476966 bp)
Overview 1 RT 1: 1355001-1359863 bp 2 RT 2: 1716065-1720365 bp 3 RT 3: 1789087-1793195 bp 4 RT 4: 1940947-1945083 bp 5 RT 5: 3177416-3181648 bp 6 RT 6: 3197905-3202786 bp 7 RT 7: 3660377-3663153 bp 8 RT 8: 3822305-3826341 bp Neighborhood of RT #1 [1355001, 1359889] int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1716065, 1720365] PRK05318 RVT-GII PRK10597 Neighborhood of RT #3 [1789087, 1793197] DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1940947, 1945085] RVT-GII PRK10276 umuC Neighborhood of RT #5 [3177416, 3182178] IS5 RVT-Retrons STKc_PknB_like Neighborhood of RT #6 [3197905, 3202791] YccC PRK10016 RVT-GII dacD Neighborhood of RT #7 [3660377, 3663153] RVT-GII Neighborhood of RT #8 [3822305, 3827195] DinI RVT-GII Phage_GPA Feature: gene Location: 1355001-1356053 bp Ori: AVZ94202.1 Feature: domain Description: int Location: 1355004-1356003 bp Feature: domain Description: int Location: 1355004-1356003 bp Feature: gene Location: 1356221-1356472 bp Feature: gene Location: 1356472-1357956 bp Ori: AVZ94204.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356874-1357564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356874-1357564 bp Feature: gene Location: 1358055-1358999 bp Feature: gene Location: 1359011-1359889 bp Ori: AVZ94206.1 Feature: domain Description: Phage_CI_repr Location: 1359038-1359221 bp Feature: domain Description: Phage_CI_repr Location: 1359038-13592 2 1 bp Feature: domain Description: Phage_CI_repr Location: 1359350-1359542 bp Feature: domain Description: Phage_CI_repr Location: 1359350-1359542 bp Feature: domain Description: Phage_CI_C Location: 1359569-1359863 bp Feature: domain Description: Phage_CI_C Location: 1359569-1359863 bp Feature: gene Location: 1716065-1717426 bp Ori: AVZ94540.1 Feature: domain Description: PRK05318 Location: 1716089-1717388 bp Feature: domain Description: PRK05318 Location: 1716089-1717388 bp Feature: gene Location: 1718016-1718267 bp Feature: gene Location: 1718267-1719751 bp Ori: AVZ94542.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1718669-1719359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1718669-1719359 bp Feature: gene Location: 1719830-1720063 bp Ori: AVZ94543.1 Feature: domain Description: PRK10597 Location: 1719833-1720058 bp Feature: domain Description: PRK10597 Location: 1719833-172 0058 bp Feature: gene Location: 1720075-1720365 bp Feature: gene Location: 1789087-1789329 bp Ori: AVZ94615.1 Feature: domain Description: DinI Location: 1789138-1789318 bp Feature: domain Description: DinI Location: 1789138-1789318 bp Feature: gene Location: 1789696-1789947 bp Feature: gene Location: 1789947-1791431 bp Ori: AVZ94617.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790349-1791039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790349-1791039 bp Feature: gene Location: 1791510-1791929 bp Ori: AVZ94618.1 Feature: domain Description: PRK10276 Location: 1791513-1791924 bp Feature: domain Description: PRK102 76 Location: 1791513-179192 4 bp Feature: gene Location: 1791932-1793197 bp Ori: AVZ94619.1 Feature: domain Description: umuC Location: 1791935-1793195 bp Feature: domain Description: umuC Location: 1791935-1793195 bp Feature: gene Location: 1940947-1941036 bp Feature: gene Location: 1941584-1941835 bp Feature: gene Location: 1941835-1943319 bp Ori: AVZ94765.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942237-1942927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942 2 37-1942 92 7 bp Feature: gene Location: 1943399-1943818 bp Ori: AVZ94766.1 Feature: domain Description: PRK10276 Location: 1943402-1943813 bp Feature: domain Description: PRK102 76 Location: 1943402 -1943813 bp Feature: gene Location: 1943820-1945085 bp Ori: AVZ94767.1 Feature: domain Description: umuC Location: 1943823-1945083 bp Feature: domain Description: umuC Location: 194382 3-1945083 bp Feature: gene Location: 3177416-3178396 bp Ori: AVZ95927.1 Feature: domain Description: IS5 Location: 3177605-3178382 bp Feature: domain Description: IS5 Location: 3177605-3178382 bp Feature: gene Location: 3178462-3179301 bp Feature: gene Location: 3179416-3180516 bp Ori: AVZ95928.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3179599-3180127 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3179599-318012 7 bp Feature: gene Location: 3180763-3181005 bp Feature: gene Location: 3181075-3182178 bp Ori: AVZ95929.1 Feature: domain Description: STKc_PknB_like Location: 3181207-3181648 bp Feature: domain Description: STKc_PknB_like Location: 31812 07-3181648 bp Feature: gene Location: 3197905-3198963 bp Ori: AVZ95948.1 Feature: domain Description: YccC Location: 3197911-3198949 bp Feature: domain Description: YccC Location: 3197911-3198949 bp Feature: gene Location: 3199062-3199535 bp Ori: AVZ95949.1 Feature: domain Description: PRK10016 Location: 3199065-3199524 bp Feature: domain Description: PRK10016 Location: 3199065-319952 4 bp Feature: gene Location: 3199617-3201101 bp Ori: AVZ95950.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3200019-3200709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 00019-32 00709 bp Feature: gene Location: 3201101-3201352 bp Feature: gene Location: 3201622-3202791 bp Ori: AVZ95952.1 Feature: domain Description: dacD Location: 3201631-3202786 bp Feature: domain Description: dacD Location: 32 01631-32 02 786 bp Feature: gene Location: 3660377-3660634 bp Feature: gene Location: 3660787-3661038 bp Feature: gene Location: 3661038-3662522 bp Ori: AVZ96336.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661440-3662130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661440-3662 130 bp Feature: gene Location: 3662619-3662957 bp Feature: gene Location: 3662950-3663153 bp Feature: gene Location: 3822305-3822538 bp Ori: AVZ96496.1 Feature: domain Description: DinI Location: 3822350-3822533 bp Feature: domain Description: DinI Location: 382 2 350-382 2 533 bp Feature: gene Location: 3822550-3822738 bp Feature: gene Location: 3822846-3824330 bp Ori: AVZ96498.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3823248-3823938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 32 48-382 3938 bp Feature: gene Location: 3824330-3824581 bp Feature: gene Location: 3824811-3827195 bp Ori: AVZ96500.1 Feature: domain Description: Phage_GPA Location: 3825375-3826341 bp Feature: domain Description: Phage_GPA Location: 382 5375-382 6341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), IS5 (COG3039)
RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), Phage_GPA (pfam05840)