myRT

myRT report for GCA_002164855.2_ASM216485v2

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Seq: CP031721.1 Klebsiella pneumoniae strain WCHKP3 chromosome, complete genome (5421726 bp)
Overview 1 RT 1: 1247125-1252010 bp 2 RT 2: 1411167-1413943 bp 3 RT 3: 1872311-1877183 bp 4 RT 4: 1892924-1899186 bp 5 RT 5: 3141041-3145179 bp 6 RT 6: 3292167-3297581 bp 7 RT 7: 3647994-3652020 bp 8 RT 8: 3655705-3660543 bp Neighborhood of RT #1 [1247125, 1252015] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1411167, 1413943] RVT-GII Neighborhood of RT #3 [1872311, 1877197] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1892924, 1899186] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3141041, 3145179] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3292167, 3297619] umuC PRK10276 RVT-GII PRK05318 Neighborhood of RT #7 [3647994, 3652904] DinI RVT-GII Phage_GPA Neighborhood of RT #8 [3655705, 3660593] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1247125-1249509 bp Ori: AXQ81233.1 Feature: domain Description: Phage_GPA Location: 1247689-1248655 bp Feature: domain Description: Phage_GPA Location: 1 247689-1 248655 bp Feature: gene Location: 1249739-1249990 bp Feature: gene Location: 1249990-1251474 bp Ori: AXQ81235.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1250392-1251082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 250392-1 251 082 bp Feature: gene Location: 1251582-1251770 bp Feature: gene Location: 1251782-1252015 bp Ori: AXQ81237.1 Feature: domain Description: DinI Location: 1251827-1252010 bp Feature: domain Description: DinI Location: 1 251 827-1 25201 0 bp Feature: gene Location: 1411167-1411370 bp Feature: gene Location: 1411363-1411701 bp Feature: gene Location: 1411798-1413282 bp Ori: AXQ81395.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412200-1412890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 2200-1 41 2890 bp Feature: gene Location: 1413282-1413533 bp Feature: gene Location: 1413686-1413943 bp Feature: gene Location: 1872311-1873480 bp Ori: AXQ81781.1 Gene: dacD Feature: domain Description: dacD Location: 1872320-1873475 bp Feature: domain Description: dacD Location: 1 872320-1 873475 bp Feature: gene Location: 1873750-1874001 bp Feature: gene Location: 1874001-1875485 bp Ori: AXQ81783.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874403-1875093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 874403-1 875093 bp Feature: gene Location: 1875567-1876040 bp Ori: AXQ81784.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1875570-1876029 bp Feature: domain Description: PRK1 001 6 Location: 1 875570-1 876029 bp Feature: gene Location: 1876139-1877197 bp Ori: AXQ81785.1 Feature: domain Description: YccC Location: 1876145-1877183 bp Feature: domain Description: YccC Location: 1 8761 45-1 8771 83 bp Feature: gene Location: 1892924-1894027 bp Ori: AXQ81805.1 Feature: domain Description: STKc_PknB_like Location: 1893056-1893497 bp Feature: domain Description: STKc_PknB_like Location: 1 893056-1 893497 bp Feature: gene Location: 1894097-1894339 bp Feature: gene Location: 1894586-1895686 bp Ori: AXQ81806.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1894769-1895297 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 894769-1 895297 bp Feature: gene Location: 1895801-1898077 bp Ori: AXQ81807.1 Feature: domain Description: AAA_15 Location: 1895834-1896842 bp Feature: domain Description: AAA_1 5 Location: 1 895834-1 896842 bp Feature: gene Location: 1898956-1899186 bp Feature: gene Location: 3141041-3142306 bp Ori: AXQ82981.1 Gene: umuC Feature: domain Description: umuC Location: 3141044-3142304 bp Feature: domain Description: umuC Location: 31 41 044-31 42304 bp Feature: gene Location: 3142308-3142727 bp Ori: AXQ82982.1 Feature: domain Description: PRK10276 Location: 3142311-3142722 bp Feature: domain Description: PRK1 0276 Location: 31 4231 1 -31 42722 bp Feature: gene Location: 3142807-3144291 bp Ori: AXQ82983.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3143209-3143899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 43209-31 43899 bp Feature: gene Location: 3144291-3144542 bp Feature: gene Location: 3145090-3145179 bp Feature: gene Location: 3292167-3293432 bp Ori: AXQ83130.1 Gene: umuC Feature: domain Description: umuC Location: 3292170-3293430 bp Feature: domain Description: umuC Location: 32921 70-3293430 bp Feature: gene Location: 3293435-3293854 bp Ori: AXQ83131.1 Feature: domain Description: PRK10276 Location: 3293438-3293849 bp Feature: domain Description: PRK1 0276 Location: 3293438-3293849 bp Feature: gene Location: 3293933-3295417 bp Ori: AXQ83132.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3294335-3295025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3294335-3295025 bp Feature: gene Location: 3295417-3295668 bp Feature: gene Location: 3296258-3297619 bp Ori: AXQ83134.1 Feature: domain Description: PRK05318 Location: 3296282-3297581 bp Feature: domain Description: PRK0531 8 Location: 3296282-3297581 bp Feature: gene Location: 3647994-3648299 bp Ori: AXQ83462.1 Feature: domain Description: DinI Location: 3648108-3648294 bp Feature: domain Description: DinI Location: 36481 08-3648294 bp Feature: gene Location: 3648238-3648426 bp Feature: gene Location: 3648527-3650011 bp Ori: AXQ83463.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3648929-3649619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3648929-364961 9 bp Feature: gene Location: 3650011-3650262 bp Feature: gene Location: 3650490-3652904 bp Ori: AXQ83465.1 Feature: domain Description: Phage_GPA Location: 3651054-3652020 bp Feature: domain Description: Phage_GPA Location: 3651 054-3652020 bp Feature: gene Location: 3655705-3656583 bp Ori: AXQ85196.1 Feature: domain Description: Phage_CI_repr Location: 3655732-3655915 bp Feature: domain Description: Phage_CI_repr Location: 3655732-365591 5 bp Feature: domain Description: Phage_CI_repr Location: 3656044-3656236 bp Feature: domain Description: Phage_CI_repr Location: 3656044-3656236 bp Feature: domain Description: Phage_CI_C Location: 3656263-3656557 bp Feature: domain Description: Phage_CI_C Location: 3656263-3656557 bp Feature: gene Location: 3656595-3657539 bp Feature: gene Location: 3657638-3659122 bp Ori: AXQ83474.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3658040-3658730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3658040-3658730 bp Feature: gene Location: 3659122-3659373 bp Feature: gene Location: 3659541-3660593 bp Ori: AXQ83476.1 Feature: domain Description: int Location: 3659544-3660543 bp Feature: domain Description: int Location: 3659544-3660543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP031720.1 Klebsiella pneumoniae strain WCHKP3 plasmid pKPC2_020003, complete sequence (154957 bp)
Overview 1 RT 1: 66772-70868 bp 2 RT 2: 125085-129167 bp Neighborhood of RT #1 [66772, 70993] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [125085, 129304] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 66772-67002 bp Feature: gene Location: 67265-67522 bp Feature: gene Location: 68402-70069 bp Ori: AXQ79915.1 Gene: ltrA Feature: domain Description: RVT_N Location: 68450-68687 bp Feature: domain Description: RVT_N Location: 68450-68687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68738-69380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68738-69380 bp Feature: domain Description: GIIM Note: maturase Location: 69431-69665 bp Feature: domain Description: GIIM Note: maturase Location: 69431-69665 bp Feature: domain Description: HNHc Note: nucleases Location: 69875-70034 bp Feature: domain Description: HNHc Note: nucleases Location: 69875-70034 bp Feature: gene Location: 70383-70574 bp Feature: gene Location: 70571-70993 bp Ori: AXQ79917.1 Feature: domain Description: DUF1380 Location: 70574-70868 bp Feature: domain Description: DUF1380 Location: 70574-70868 bp Feature: gene Location: 125085-125516 bp Ori: AXQ79969.1 Feature: domain Description: PRK10276 Location: 125136-125499 bp Feature: domain Description: PRK102 76 Location: 12 5136-12 5499 bp Feature: gene Location: 125675-125926 bp Feature: gene Location: 125926-127410 bp Ori: AXQ79971.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126328-127018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 632 8-12 7018 bp Feature: gene Location: 127659-128630 bp Ori: AXQ79972.1 Feature: domain Description: StbA Location: 127662-128607 bp Feature: domain Description: StbA Location: 12 7662 -12 8607 bp Feature: gene Location: 128633-129304 bp Ori: AXQ79973.1 Feature: domain Description: Plasmid_stab_B Location: 128648-128855 bp Feature: domain Description: Plasmid_stab_B Location: 12 8648-12 8855 bp Feature: domain Description: Plasmid_stab_B Location: 128960-129167 bp Feature: domain Description: Plasmid_stab_B Location: 12 8960-12 9167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)