myRT

myRT report for GCA_002164865.2_ASM216486v2

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Seq: CP034963.1 Escherichia coli strain WCHEC020032 plasmid pCMY42_020032, complete sequence (38448 bp)
Overview 1 RT 1: 6665-12631 bp Neighborhood of RT #1 [6665, 12631] umuC PRK10276 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 6665-7936 bp Ori: QAS87902.1 Gene: umuC Feature: domain Description: umuC Location: 6668-7928 bp Feature: domain Description: umuC Location: 6668-7928 bp Feature: gene Location: 7936-8355 bp Ori: QAS87903.1 Feature: domain Description: PRK10276 Location: 7975-8341 bp Feature: domain Description: PRK1 0276 Location: 7975-8341 bp Feature: gene Location: 8713-10614 bp Ori: QAS87904.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8980-9811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8980-981 1 bp Feature: domain Description: Intron_maturas2 Location: 9925-10183 bp Feature: domain Description: Intron_maturas2 Location: 9925-1 01 83 bp Feature: domain Description: HNHc Note: nucleases Location: 10357-10519 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0357-1 051 9 bp Feature: gene Location: 10797-11150 bp Feature: gene Location: 12035-12631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CP034966.1 Escherichia coli strain WCHEC020032 chromosome, complete genome (4686461 bp)
Overview 1 RT 1: 67780-71660 bp 2 RT 2: 3937366-3943648 bp Neighborhood of RT #1 [67780, 71665] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [3937366, 3943875] PRK10597 SLATT_5 RVT-UG17 phage_tail_N 7tmA_amine_R-like Peptidase_S74 Feature: gene Location: 67780-68496 bp Ori: QAS88165.1 Feature: domain Description: rph Location: 67783-68491 bp Feature: domain Description: rph Location: 67783-68491 bp Feature: gene Location: 68563-69204 bp Ori: QAS88166.1 Feature: domain Description: pyrE Location: 68566-69199 bp Feature: domain Description: pyrE Location: 68566-69199 bp Feature: gene Location: 69502-70461 bp Ori: QAS88167.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69637-70186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69637-70186 bp Feature: gene Location: 70507-71103 bp Ori: QAS88168.1 Gene: slmA Feature: domain Description: slmA Location: 70513-71089 bp Feature: domain Description: slmA Location: 70513-71089 bp Feature: gene Location: 71210-71665 bp Ori: QAS92217.1 Feature: domain Description: dut Location: 71213-71660 bp Feature: domain Description: dut Location: 712 13-71660 bp Feature: gene Location: 3937366-3937614 bp Ori: QAS91578.1 Feature: domain Description: PRK10597 Location: 3937369-3937609 bp Feature: domain Description: PRK10597 Location: 3937369-3937609 bp Feature: gene Location: 3937837-3938388 bp Ori: QAS91579.1 Feature: domain Description: SLATT_5 Location: 3937843-3938359 bp Feature: domain Description: SLATT_5 Location: 3937843-3938359 bp Feature: gene Location: 3938366-3939736 bp Ori: QAS91580.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3938594-3939200 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3938594-39392 00 bp Feature: gene Location: 3939836-3940051 bp Feature: gene Location: 3940174-3943875 bp Ori: QAS91581.1 Feature: domain Description: phage_tail_N Location: 3940177-3940576 bp Feature: domain Description: phage_tail_N Location: 3940177-3940576 bp Feature: domain Description: 7tmA_amine_R-like Location: 3940993-3942061 bp Feature: domain Description: 7tmA_amine_R-like Location: 3940993-3942 061 bp Feature: domain Description: Peptidase_S74 Location: 3943501-3943648 bp Feature: domain Description: Peptidase_S74 Location: 3943501-3943648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967)
Peptidase_S74 (pfam13884)