myRT

myRT report for GCA_002165095.2_ASM216509v2

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Seq: CP032891.1 Escherichia coli strain SCEC020022 plasmid pVir_020022, complete sequence (67351 bp)
Overview 1 RT 1: 7767-11524 bp Neighborhood of RT #1 [7767, 11666] InsE RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 7767-8506 bp Feature: domain Description: InsE Location: 7770-8109 bp Feature: domain Description: InsE Location: 7770-81 09 bp Feature: gene Location: 8499-8870 bp Feature: gene Location: 9164-10687 bp Ori: AYL89198.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9437-10169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9437-1 01 69 bp Feature: domain Description: GIIM Note: maturase Location: 10244-10442 bp Feature: domain Description: GIIM Note: maturase Location: 1 0244-1 0442 bp Feature: gene Location: 10777-11250 bp Feature: domain Description: PHA02517 Location: 10783-11248 bp Feature: domain Description: PHA0251 7 Location: 1 0783-1 1 248 bp Feature: gene Location: 11398-11666 bp Feature: domain Description: PHA02517 Location: 11401-11524 bp Feature: domain Description: PHA0251 7 Location: 1 1 401 -1 1 524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CP032890.1 Escherichia coli strain SCEC020022 plasmid pTetA_020022, complete sequence (91014 bp)
Overview 1 RT 1: 7825-11632 bp Neighborhood of RT #1 [7825, 12029] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 7825-8406 bp Feature: gene Location: 8546-9019 bp Feature: domain Description: PHA02517 Location: 8552-9017 bp Feature: domain Description: PHA02 517 Location: 8552 -9017 bp Feature: gene Location: 9109-10632 bp Ori: AYL89102.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9382-10114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9382 -10114 bp Feature: domain Description: GIIM Note: maturase Location: 10189-10387 bp Feature: domain Description: GIIM Note: maturase Location: 10189-10387 bp Feature: gene Location: 10926-11297 bp Feature: gene Location: 11290-12029 bp Feature: domain Description: InsE Location: 11293-11632 bp Feature: domain Description: InsE Location: 112 93-11632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP032888.1 Escherichia coli strain SCEC020022 plasmid pCTXM14_020022, complete sequence (109553 bp)
Overview 1 RT 1: 40760-44418 bp Neighborhood of RT #1 [40760, 44420] RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 40760-40858 bp Feature: gene Location: 40896-41081 bp Feature: gene Location: 41059-42726 bp Ori: AYL88948.1 Gene: ltrA Feature: domain Description: RVT_N Location: 41107-41344 bp Feature: domain Description: RVT_N Location: 41107-413 44 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41395-42037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 95-4203 7 bp Feature: domain Description: GIIM Note: maturase Location: 42088-42322 bp Feature: domain Description: GIIM Note: maturase Location: 42088-423 22 bp Feature: domain Description: HNHc Note: nucleases Location: 42532-42691 bp Feature: domain Description: HNHc Note: nucleases Location: 4253 2-42691 bp Feature: gene Location: 43440-43946 bp Feature: gene Location: 43893-44420 bp Ori: AYL88950.1 Gene: ssb Feature: domain Description: PRK13732 Location: 43896-44418 bp Feature: domain Description: PRK13 73 2 Location: 43 896-44418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: CP032892.1 Escherichia coli strain SCEC020022 chromosome, complete genome (4894694 bp)
Overview 1 RT 1: 737128-742820 bp 2 RT 2: 3785636-3796575 bp Neighborhood of RT #1 [737128, 743278] InsE RVT-GII GIIM PHA02517 HsdM Neighborhood of RT #2 [3785636, 3796575] Psu RVT-UG7 PRK09692 DUF4062 HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 737128-737867 bp Feature: domain Description: InsE Location: 737131-737467 bp Feature: domain Description: InsE Location: 737131-7374 67 bp Feature: gene Location: 737860-738231 bp Feature: gene Location: 738525-740048 bp Ori: AYL89921.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738798-739530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738798-739530 bp Feature: domain Description: GIIM Note: maturase Location: 739605-739803 bp Feature: domain Description: GIIM Note: maturase Location: 739605-739803 bp Feature: gene Location: 740129-740596 bp Feature: domain Description: PHA02517 Location: 740132-740591 bp Feature: domain Description: PHA02517 Location: 74 0132-74 0591 bp Feature: gene Location: 740855-743278 bp Ori: AYL89922.1 Feature: domain Description: HsdM Location: 740876-742820 bp Feature: domain Description: HsdM Location: 74 0876-74 2820 bp Feature: gene Location: 3785636-3786208 bp Ori: AYL92654.1 Feature: domain Description: Psu Location: 3785654-3786191 bp Feature: domain Description: Psu Location: 3785654 -3786191 bp Feature: gene Location: 3786511-3787251 bp Feature: gene Location: 3787248-3788876 bp Ori: AYL92656.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3787656-3788085 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3787656-3788085 bp Feature: gene Location: 3788869-3790053 bp Ori: AYL92657.1 Feature: domain Description: PRK09692 Location: 3788875-3790030 bp Feature: domain Description: PRK09692 Location: 3788875-3790030 bp Feature: gene Location: 3790762-3791943 bp Ori: AYL92658.1 Feature: domain Description: DUF4062 Location: 3790777-3791104 bp Feature: domain Description: DUF4 062 Location: 3790777-3791104 bp Feature: gene Location: 3791974-3792435 bp Ori: AYL92659.1 Feature: domain Description: HTH_XRE Location: 3792004-3792172 bp Feature: domain Description: HTH_XRE Location: 3792004 -3792172 bp Feature: gene Location: 3792675-3793172 bp Feature: gene Location: 3793309-3795015 bp Ori: AYL92660.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3793459-3794056 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37934 59-3794 056 bp Feature: gene Location: 3795283-3795948 bp Ori: AYL92661.1 Feature: domain Description: Resolvase Location: 3795304-3795721 bp Feature: domain Description: Resolvase Location: 3795304 -3795721 bp Feature: gene Location: 3796231-3796575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HsdM (COG0286), Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), DUF4062 (pfam13271), HTH_XRE (smart00530)
RVT-Retrons, Resolvase (smart00857)