myRT

myRT report for GCA_002165115.2_ASM216511v2

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Seq: CP032426.1 Escherichia coli strain SCEC020001 chromosome, complete genome (4908742 bp)
Overview 1 RT 1: 99337-103217 bp 2 RT 2: 932128-935407 bp Neighborhood of RT #1 [99337, 103222] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [932128, 935807] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 99337-100053 bp Ori: AYC45236.1 Feature: domain Description: rph Location: 99340-100048 bp Feature: domain Description: rph Location: 99340-1 00048 bp Feature: gene Location: 100120-100761 bp Ori: AYC45237.1 Feature: domain Description: pyrE Location: 100123-100756 bp Feature: domain Description: pyrE Location: 1 001 23-1 00756 bp Feature: gene Location: 101059-102018 bp Ori: AYC45238.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101194-101743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 01 1 94-1 01 743 bp Feature: gene Location: 102064-102660 bp Ori: AYC45239.1 Gene: slmA Feature: domain Description: slmA Location: 102070-102646 bp Feature: domain Description: slmA Location: 1 02070-1 02646 bp Feature: gene Location: 102767-103222 bp Ori: AYC49526.1 Feature: domain Description: dut Location: 102770-103217 bp Feature: domain Description: dut Location: 1 02770-1 0321 7 bp Feature: gene Location: 932128-932358 bp Feature: gene Location: 932324-932797 bp Feature: domain Description: PHA02517 Location: 932330-932795 bp Feature: domain Description: PHA0251 7 Location: 932330-932795 bp Feature: gene Location: 932887-934410 bp Ori: AYC45985.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933160-933892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9331 60-933892 bp Feature: domain Description: GIIM Note: maturase Location: 933967-934165 bp Feature: domain Description: GIIM Note: maturase Location: 933967-9341 65 bp Feature: gene Location: 934704-935075 bp Feature: gene Location: 935068-935807 bp Feature: domain Description: InsE Location: 935071-935407 bp Feature: domain Description: InsE Location: 935071 -935407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)