myRT

myRT report for GCA_002166795.1_ASM216679v1

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Seq: CP019222.1 Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_3, complete sequence (32137 bp)
Overview 1 RT 1: 19091-24405 bp Neighborhood of RT #1 [19091, 24405] HTH_23 HAUS5 RVT-UG23 PinE Feature: gene Location: 19091-19663 bp Ori: ARV85383.1 Feature: domain Description: HTH_23 Location: 19343-19433 bp Feature: domain Description: HTH_23 Location: 1 9343-1 9433 bp Feature: gene Location: 20684-21295 bp Ori: ARV85384.1 Feature: domain Description: HAUS5 Location: 21011-21275 bp Feature: domain Description: HAUS5 Location: 21 01 1 -21 275 bp Feature: gene Location: 21694-23238 bp Ori: ARV85385.1 Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 21892-22543 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 21 892-22543 bp Feature: gene Location: 23471-24058 bp Ori: ARV85386.1 Feature: domain Description: PinE Location: 23483-24038 bp Feature: domain Description: PinE Location: 23483-24038 bp Feature: gene Location: 24055-24405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HAUS5 (pfam14817), RVT-UG23, PinE (COG1961)

Seq: CP019221.1 Mycobacterium chimaera strain CDC 2015-22-71, complete genome (6078402 bp)
Overview 1 RT 1: 968394-974660 bp 2 RT 2: 1046486-1052338 bp 3 RT 3: 2218745-2224000 bp 4 RT 4: 4460656-4466331 bp Neighborhood of RT #1 [968394, 974660] CzcO Transposase_mut RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #2 [1046486, 1052349] MhpC RVT-GII GIIM TetR_N TetR_C_35 CypX Neighborhood of RT #3 [2218745, 2224014] COG3462 RVT-GII GIIM NuoN Neighborhood of RT #4 [4460656, 4466331] DUF1490 LZ_Tnp_IS481 Tra5 RVT-GII GIIM AdaB Feature: gene Location: 968394-968768 bp Ori: ARV80697.1 Feature: domain Description: CzcO Location: 968403-968661 bp Feature: domain Description: CzcO Location: 968403-968661 bp Feature: gene Location: 968863-970077 bp Ori: ARV80698.1 Feature: domain Description: Transposase_mut Location: 968950-969766 bp Feature: domain Description: Transposase_mut Location: 968950-969766 bp Feature: gene Location: 970329-972116 bp Ori: ARV80699.1 Feature: domain Description: RVT_N Location: 970359-970596 bp Feature: domain Description: RVT_N Location: 970359-970596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970656-971316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970656-971316 bp Feature: domain Description: GIIM Note: maturase Location: 971385-971616 bp Feature: domain Description: GIIM Note: maturase Location: 971385-971616 bp Feature: gene Location: 972829-974067 bp Ori: ARV80700.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 972841-973312 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 972 841-973312 bp Feature: domain Description: Transposase_20 Location: 973654-973906 bp Feature: domain Description: Transposase_2 0 Location: 973654-973906 bp Feature: gene Location: 974481-974660 bp Feature: gene Location: 1046486-1047382 bp Ori: ARV80754.1 Feature: domain Description: MhpC Location: 1046510-1047362 bp Feature: domain Description: MhpC Location: 1046510-1047362 bp Feature: gene Location: 1047379-1047570 bp Feature: gene Location: 1048175-1049623 bp Ori: ARV80755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1048493-1049180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1048493-1049180 bp Feature: domain Description: GIIM Note: maturase Location: 1049255-1049450 bp Feature: domain Description: GIIM Note: maturase Location: 10492 55-1049450 bp Feature: gene Location: 1050370-1050960 bp Ori: ARV84927.1 Feature: domain Description: TetR_N Location: 1050388-1050520 bp Feature: domain Description: TetR_N Location: 1050388-105052 0 bp Feature: domain Description: TetR_C_35 Location: 1050589-1050922 bp Feature: domain Description: TetR_C_35 Location: 1050589-105092 2 bp Feature: gene Location: 1051048-1052349 bp Ori: ARV80756.1 Feature: domain Description: CypX Location: 1051123-1052338 bp Feature: domain Description: CypX Location: 105112 3-1052 338 bp Feature: gene Location: 2218745-2219005 bp Ori: ARV85023.1 Feature: domain Description: COG3462 Location: 2218766-2218985 bp Feature: domain Description: COG3462 Location: 2 2 18766-2 2 18985 bp Feature: gene Location: 2219494-2219742 bp Feature: gene Location: 2220069-2221541 bp Ori: ARV81679.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2220411-2221107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 2 0411-2 2 2 1107 bp Feature: domain Description: GIIM Note: maturase Location: 2221176-2221389 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 2 1176-2 2 2 1389 bp Feature: gene Location: 2222211-2222536 bp Feature: gene Location: 2222596-2224014 bp Ori: ARV81680.1 Feature: domain Description: NuoN Location: 2222629-2224000 bp Feature: domain Description: NuoN Location: 2 2 2 2 62 9-2 2 2 4000 bp Feature: gene Location: 4460656-4460937 bp Ori: ARV85225.1 Feature: domain Description: DUF1490 Location: 4460659-4460917 bp Feature: domain Description: DUF1490 Location: 4460659-4460917 bp Feature: gene Location: 4461583-4463409 bp Ori: ARV83444.1 Feature: domain Description: LZ_Tnp_IS481 Location: 4461649-4461823 bp Feature: domain Description: LZ_Tnp_IS481 Location: 4461649-446182 3 bp Feature: domain Description: Tra5 Location: 4461826-4462486 bp Feature: domain Description: Tra5 Location: 446182 6-4462 486 bp Feature: gene Location: 4464016-4465488 bp Ori: ARV83445.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4464358-4465054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4464358-4465054 bp Feature: domain Description: GIIM Note: maturase Location: 4465123-4465342 bp Feature: domain Description: GIIM Note: maturase Location: 446512 3-4465342 bp Feature: gene Location: 4465740-4465970 bp Feature: domain Description: AdaB Location: 4465743-4465941 bp Feature: domain Description: AdaB Location: 4465743-4465941 bp Feature: gene Location: 4466023-4466331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CzcO (COG2072), Transposase_mut (pfam00872), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), MhpC (COG0596), TetR_N (pfam00440), TetR_C_35 (pfam18556)
CypX (COG2124), COG3462 (Uncharacterized membrane protein ), NuoN (COG1007), DUF1490 (pfam07371), LZ_Tnp_IS481 (pfam13011), Tra5 (COG2801), AdaB (COG0350)