myRT

myRT report for GCA_002173755.1_ASM217375v1

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Seq: CP017574.1 Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence (364037 bp)
Overview 1 RT 1: 52690-56454 bp 2 RT 2: 180411-186483 bp 3 RT 3: 201902-209856 bp 4 RT 4: 217929-224608 bp Neighborhood of RT #1 [52690, 56453] Methyltransf_25 RVT-GII VOC_like Neighborhood of RT #2 [180411, 186578] AAA_10 RVT-GII HNHc AAA_10 TcpE Neighborhood of RT #3 [201902, 210587] xerC TraG-D_C RVT-GII Intron_maturas2 HNHc Replic_Relax Neighborhood of RT #4 [217929, 224608] HTH_XRE RVT-GII GIIM HNHc DUF3854 Feature: gene Location: 52690-53058 bp Feature: gene Location: 53292-54020 bp Ori: ARV91148.1 Feature: domain Description: Methyltransf_25 Location: 53421-53697 bp Feature: domain Description: Methyltransf_25 Location: 53421 -53697 bp Feature: gene Location: 55089-55484 bp Ori: ARV91149.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55155-55392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 55-55392 bp Feature: gene Location: 55888-56157 bp Feature: gene Location: 56295-56453 bp Feature: domain Description: VOC_like Location: 56301-56454 bp Feature: domain Description: VOC_like Location: 56301 -56454 bp Feature: gene Location: 180411-180893 bp Feature: gene Location: 180895-181914 bp Feature: domain Description: AAA_10 Location: 180901-181798 bp Feature: domain Description: AAA_1 0 Location: 1 80901 -1 81 798 bp Feature: gene Location: 182031-183863 bp Ori: ARV91251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182331-183036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 82331 -1 83036 bp Feature: domain Description: HNHc Note: nucleases Location: 183615-183747 bp Feature: domain Description: HNHc Note: nucleases Location: 1 8361 5-1 83747 bp Feature: gene Location: 184600-186114 bp Feature: domain Description: AAA_10 Location: 185941-186115 bp Feature: domain Description: AAA_1 0 Location: 1 85941 -1 861 1 5 bp Feature: gene Location: 186174-186578 bp Ori: ARV91252.1 Feature: domain Description: TcpE Location: 186210-186483 bp Feature: domain Description: TcpE Location: 1 8621 0-1 86483 bp Feature: gene Location: 201902-202876 bp Ori: ARV91262.1 Feature: domain Description: xerC Location: 201929-202778 bp Feature: domain Description: xerC Location: 201 929-202778 bp Feature: gene Location: 203443-204843 bp Feature: domain Description: TraG-D_C Location: 203590-203953 bp Feature: domain Description: TraG-D_C Location: 203590-203953 bp Feature: gene Location: 204944-206761 bp Ori: ARV91263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205208-206039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205208-206039 bp Feature: domain Description: Intron_maturas2 Location: 206117-206411 bp Feature: domain Description: Intron_maturas2 Location: 2061 1 7-20641 1 bp Feature: domain Description: HNHc Note: nucleases Location: 206558-206735 bp Feature: domain Description: HNHc Note: nucleases Location: 206558-206735 bp Feature: gene Location: 207380-209065 bp Feature: gene Location: 209037-210587 bp Ori: ARV91264.1 Feature: domain Description: Replic_Relax Location: 209133-209856 bp Feature: domain Description: Replic_Relax Location: 2091 33-209856 bp Feature: gene Location: 217929-218171 bp Ori: ARV91271.1 Feature: domain Description: HTH_XRE Location: 217998-218136 bp Feature: domain Description: HTH_XRE Location: 21 7998-21 81 36 bp Feature: gene Location: 218173-219723 bp Feature: gene Location: 220783-222606 bp Ori: ARV91389.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221077-221776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 077-221 776 bp Feature: domain Description: GIIM Note: maturase Location: 221860-222103 bp Feature: domain Description: GIIM Note: maturase Location: 221 860-2221 03 bp Feature: domain Description: HNHc Note: nucleases Location: 222349-222487 bp Feature: domain Description: HNHc Note: nucleases Location: 222349-222487 bp Feature: gene Location: 222698-223882 bp Ori: ARV91390.1 Feature: domain Description: DUF3854 Location: 223529-223850 bp Feature: domain Description: DUF3854 Location: 223529-223850 bp Feature: gene Location: 224378-224608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_25 (pfam13649), RVT-GII, VOC_like (cd16355), AAA_10 (pfam12846), HNHc (smart00507), TcpE (pfam12648), xerC (PRK01287), TraG-D_C (pfam12696), Intron_maturas2 (pfam01348), Replic_Relax (pfam13814)
HTH_XRE (smart00530), GIIM (pfam08388), DUF3854 (pfam12965)

Seq: CP017577.1 Bacillus thuringiensis strain SCG04-02, complete genome (5436019 bp)
Overview 1 RT 1: 919036-925241 bp 2 RT 2: 2698009-2703185 bp 3 RT 3: 5326542-5331471 bp Neighborhood of RT #1 [919036, 925276] YphP_YqiW SAM_MT RVT-GII Intron_maturas2 HNHc PRK12451 DUF2085 Neighborhood of RT #2 [2698009, 2703241] YugN RVT-GII HNHc amiF caa3_CtaG Neighborhood of RT #3 [5326542, 5331471] Imm26 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 919036-919470 bp Ori: ARV92336.1 Feature: domain Description: YphP_YqiW Location: 919060-919468 bp Feature: domain Description: YphP_YqiW Location: 919060-919468 bp Feature: gene Location: 919520-920086 bp Ori: ARV92337.1 Feature: domain Description: SAM_MT Location: 919643-920075 bp Feature: domain Description: SAM_MT Location: 919643-92 0075 bp Feature: gene Location: 920702-922519 bp Ori: ARV92338.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920966-921797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 0966-92 1797 bp Feature: domain Description: Intron_maturas2 Location: 921875-922169 bp Feature: domain Description: Intron_maturas2 Location: 92 1875-92 2 169 bp Feature: domain Description: HNHc Note: nucleases Location: 922316-922493 bp Feature: domain Description: HNHc Note: nucleases Location: 92 2 316-92 2 493 bp Feature: gene Location: 923146-924834 bp Ori: ARV92339.1 Feature: domain Description: PRK12451 Location: 923149-924832 bp Feature: domain Description: PRK12 451 Location: 92 3149-92 4832 bp Feature: gene Location: 924947-925276 bp Ori: ARV92340.1 Feature: domain Description: DUF2085 Location: 924980-925241 bp Feature: domain Description: DUF2 085 Location: 92 4980-92 52 41 bp Feature: gene Location: 2698009-2698374 bp Ori: ARV94000.1 Feature: domain Description: YugN Location: 2698027-2698285 bp Feature: domain Description: YugN Location: 2 69802 7-2 6982 85 bp Feature: gene Location: 2698421-2699046 bp Feature: gene Location: 2699163-2700995 bp Ori: ARV94001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699463-2700168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 699463-2 700168 bp Feature: domain Description: HNHc Note: nucleases Location: 2700747-2700879 bp Feature: domain Description: HNHc Note: nucleases Location: 2 700747-2 700879 bp Feature: gene Location: 2701729-2702100 bp Gene: amiF Feature: domain Description: amiF Location: 2701732-2702101 bp Feature: domain Description: amiF Location: 2 701732 -2 702 101 bp Feature: gene Location: 2702336-2703241 bp Ori: ARV94002.1 Feature: domain Description: caa3_CtaG Location: 2702345-2703185 bp Feature: domain Description: caa3_CtaG Location: 2 702 345-2 703185 bp Feature: gene Location: 5326542-5327270 bp Ori: ARV96495.1 Feature: domain Description: Imm26 Location: 5326797-5327106 bp Feature: domain Description: Imm2 6 Location: 532 6797-532 7106 bp Feature: gene Location: 5327333-5327533 bp Feature: gene Location: 5327599-5329416 bp Ori: ARV96497.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5327863-5328694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532 7863-532 8694 bp Feature: domain Description: Intron_maturas2 Location: 5328772-5329066 bp Feature: domain Description: Intron_maturas2 Location: 532 8772 -532 9066 bp Feature: domain Description: HNHc Note: nucleases Location: 5329213-5329390 bp Feature: domain Description: HNHc Note: nucleases Location: 532 92 13-532 9390 bp Feature: gene Location: 5330163-5330693 bp Feature: gene Location: 5330716-5331471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YphP_YqiW (TIGR04191), SAM_MT (pfam04445), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK12451 (arginyl-tRNA synthetase; Reviewed), DUF2085 (pfam09858), YugN (pfam08868), amiF (PRK13287), caa3_CtaG (TIGR02737)
Imm26 (pfam15428)