myRT

myRT report for GCA_002174695.2_ASM217469v2

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Seq: CP037996.1 Shigella flexneri strain FC906 chromosome, complete genome (4655489 bp)
Overview 1 RT 1: 1560415-1564803 bp 2 RT 2: 1656310-1658714 bp 3 RT 3: 2401205-2405065 bp 4 RT 4: 2448849-2452065 bp 5 RT 5: 3451195-3455175 bp 6 RT 6: 4316377-4319761 bp 7 RT 7: 4434938-4442305 bp Neighborhood of RT #1 [1560415, 1564891] InsE PHA02517 RVT-GII PHA02517 PHA02517 Terminase_6 Terminase_6C Neighborhood of RT #2 [1656310, 1659111] HTH_Tnp_1 RVT-GII rve_2 InsE Neighborhood of RT #3 [2401205, 2405064] Inovirus_Gp2 PHA02517 RVT-GII InsE PHA02517 Neighborhood of RT #4 [2448849, 2452530] csgC PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [3451195, 3455198] InsE RVT-GII GIIM PHA02517 DDE_Tnp_IS66_C Neighborhood of RT #6 [4316377, 4320176] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #7 [4434938, 4442702] Peptidase_S6 autotrans_barl PHA02517 RVT-GII InsE Feature: gene Location: 1560415-1561098 bp Feature: domain Description: InsE Location: 1560424-1560715 bp Feature: domain Description: InsE Location: 1 560424-1 56071 5 bp Feature: domain Description: PHA02517 Location: 1560796-1561099 bp Feature: domain Description: PHA0251 7 Location: 1 560796-1 561 099 bp Feature: gene Location: 1561094-1561462 bp Feature: gene Location: 1562182-1563472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1562224-1562482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 562224-1 562482 bp Feature: domain Description: PHA02517 Location: 1563358-1563472 bp Feature: domain Description: PHA0251 7 Location: 1 563358-1 563472 bp Feature: gene Location: 1563355-1563843 bp Feature: domain Description: PHA02517 Location: 1563358-1563832 bp Feature: domain Description: PHA0251 7 Location: 1 563358-1 563832 bp Feature: gene Location: 1563837-1564891 bp Feature: domain Description: Terminase_6 Location: 1563849-1564302 bp Feature: domain Description: Terminase_6 Location: 1 563849-1 564302 bp Feature: domain Description: Terminase_6C Location: 1564347-1564803 bp Feature: domain Description: Terminase_6C Location: 1 564347-1 564803 bp Feature: gene Location: 1656310-1656619 bp Ori: QBQ21608.1 Feature: domain Description: HTH_Tnp_1 Location: 1656388-1656592 bp Feature: domain Description: HTH_Tnp_1 Location: 1 656388-1 656592 bp Feature: gene Location: 1655403-1656310 bp Feature: gene Location: 1656585-1657703 bp Ori: QBQ24058.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1656843-1657461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 656843-1 657461 bp Feature: domain Description: rve_2 Location: 1657506-1657650 bp Feature: domain Description: rve_2 Location: 1 657506-1 657650 bp Feature: gene Location: 1658008-1658379 bp Feature: gene Location: 1658372-1659111 bp Feature: domain Description: InsE Location: 1658375-1658714 bp Feature: domain Description: InsE Location: 1 658375-1 65871 4 bp Feature: gene Location: 2401205-2401543 bp Feature: domain Description: Inovirus_Gp2 Location: 2401274-2401538 bp Feature: domain Description: Inovirus_Gp2 Location: 2401 274-2401 538 bp Feature: gene Location: 2401586-2402059 bp Feature: domain Description: PHA02517 Location: 2401592-2402057 bp Feature: domain Description: PHA0251 7 Location: 2401 592-2402057 bp Feature: gene Location: 2402149-2403671 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402422-2402878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402422-2402878 bp Feature: gene Location: 2403963-2404334 bp Feature: gene Location: 2404327-2405064 bp Feature: domain Description: InsE Location: 2404330-2404669 bp Feature: domain Description: InsE Location: 2404330-2404669 bp Feature: domain Description: PHA02517 Location: 2404945-2405065 bp Feature: domain Description: PHA0251 7 Location: 2404945-2405065 bp Feature: gene Location: 2448849-2449088 bp Feature: domain Description: csgC Location: 2448948-2449089 bp Feature: domain Description: csgC Location: 2448948-2449089 bp Feature: gene Location: 2449098-2449586 bp Feature: domain Description: PHA02517 Location: 2449101-2449575 bp Feature: domain Description: PHA0251 7 Location: 24491 01 -2449575 bp Feature: gene Location: 2449666-2451174 bp Ori: QBQ24094.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449924-2450656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449924-2450656 bp Feature: domain Description: GIIM Note: maturase Location: 2450731-2450929 bp Feature: domain Description: GIIM Note: maturase Location: 2450731 -2450929 bp Feature: gene Location: 2451483-2451850 bp Feature: gene Location: 2451846-2452530 bp Feature: domain Description: InsE Location: 2451855-2452065 bp Feature: domain Description: InsE Location: 2451 855-2452065 bp Feature: gene Location: 3451195-3451930 bp Feature: domain Description: InsE Location: 3451198-3451537 bp Feature: domain Description: InsE Location: 3451 1 98-3451 537 bp Feature: gene Location: 3451923-3452294 bp Feature: gene Location: 3452603-3454111 bp Ori: QBQ24145.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452861-3453593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452861 -3453593 bp Feature: domain Description: GIIM Note: maturase Location: 3453668-3453866 bp Feature: domain Description: GIIM Note: maturase Location: 3453668-3453866 bp Feature: gene Location: 3454201-3454674 bp Feature: domain Description: PHA02517 Location: 3454207-3454672 bp Feature: domain Description: PHA0251 7 Location: 3454207-3454672 bp Feature: gene Location: 3455052-3455198 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3455073-3455175 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3455073-34551 75 bp Feature: gene Location: 4316377-4316739 bp Feature: gene Location: 4316736-4317224 bp Feature: domain Description: PHA02517 Location: 4316739-4317213 bp Feature: domain Description: PHA0251 7 Location: 431 6739-431 721 3 bp Feature: gene Location: 4317305-4318813 bp Ori: QBQ24178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4317563-4318295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 7563-431 8295 bp Feature: domain Description: GIIM Note: maturase Location: 4318370-4318568 bp Feature: domain Description: GIIM Note: maturase Location: 431 8370-431 8568 bp Feature: gene Location: 4319121-4319489 bp Feature: gene Location: 4319485-4320176 bp Feature: domain Description: InsE Location: 4319494-4319761 bp Feature: domain Description: InsE Location: 431 9494-431 9761 bp Feature: gene Location: 4434938-4439056 bp Ori: QBQ23822.1 Gene: pic Feature: domain Description: Peptidase_S6 Location: 4435091-4437263 bp Feature: domain Description: Peptidase_S6 Location: 4435091 -4437263 bp Feature: domain Description: autotrans_barl Location: 4437827-4439054 bp Feature: domain Description: autotrans_barl Location: 4437827-4439054 bp Feature: gene Location: 4439221-4439694 bp Feature: domain Description: PHA02517 Location: 4439227-4439692 bp Feature: domain Description: PHA0251 7 Location: 4439227-4439692 bp Feature: gene Location: 4439784-4441291 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4440042-4440681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4440042-4440681 bp Feature: gene Location: 4441600-4441970 bp Feature: gene Location: 4441963-4442702 bp Feature: domain Description: InsE Location: 4441966-4442305 bp Feature: domain Description: InsE Location: 4441 966-4442305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, Terminase_6 (pfam03237), Terminase_6C (pfam17289), HTH_Tnp_1 (pfam01527), rve_2 (pfam13333), Inovirus_Gp2 (pfam11726), csgC (PRK10102), GIIM (pfam08388)
DDE_Tnp_IS66_C (pfam13817), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)