myRT

myRT report for GCA_002180055.1_ASM218005v1

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Seq: CP021532.1 Escherichia coli strain AR_0149, complete genome (4830167 bp)
Overview 1 RT 1: 942686-949856 bp 2 RT 2: 962372-965367 bp 3 RT 3: 1385831-1389679 bp 4 RT 4: 2341607-2346310 bp 5 RT 5: 4271071-4275354 bp 6 RT 6: 4578554-4581584 bp Neighborhood of RT #1 [942686, 949856] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [962372, 965534] RVT-GII GIIM PHA02517 COG2085 Neighborhood of RT #3 [1385831, 1389690] RVT-GII GIIM PHA02517 DUF3387 Neighborhood of RT #4 [2341607, 2346310] PHA02517 RVT-GII GIIM Neighborhood of RT #5 [4271071, 4275362] RVT-GII RVT-GII GIIM YesM Neighborhood of RT #6 [4578554, 4581584] DUF1016_N PHA02517 RVT-GII GIIM Feature: gene Location: 942686-942958 bp Ori: ARW86283.1 Feature: domain Description: PRK09678 Location: 942695-942851 bp Feature: domain Description: PRK09678 Location: 942695-942851 bp Feature: gene Location: 943604-944572 bp Feature: gene Location: 944574-945506 bp Ori: ARW86285.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 944676-945270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 944676-945270 bp Feature: gene Location: 945961-946874 bp Feature: domain Description: Arm-DNA-bind_3 Location: 945970-946222 bp Feature: domain Description: Arm-DNA-bind_3 Location: 945970-946222 bp Feature: gene Location: 947105-947584 bp Feature: domain Description: PHA02517 Location: 947108-947582 bp Feature: domain Description: PHA0251 7 Location: 9471 08-947582 bp Feature: gene Location: 947668-949191 bp Ori: ARW86286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947941-948673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947941 -948673 bp Feature: domain Description: GIIM Note: maturase Location: 948748-948946 bp Feature: domain Description: GIIM Note: maturase Location: 948748-948946 bp Feature: gene Location: 949145-949570 bp Feature: gene Location: 949485-949856 bp Feature: gene Location: 962372-962809 bp Feature: gene Location: 962724-963149 bp Feature: gene Location: 963103-964626 bp Ori: ARW86299.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963376-964108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963376-9641 08 bp Feature: domain Description: GIIM Note: maturase Location: 964183-964381 bp Feature: domain Description: GIIM Note: maturase Location: 9641 83-964381 bp Feature: gene Location: 964707-965194 bp Feature: domain Description: PHA02517 Location: 964710-964881 bp Feature: domain Description: PHA0251 7 Location: 96471 0-964881 bp Feature: gene Location: 965121-965534 bp Ori: ARW86300.1 Feature: domain Description: COG2085 Location: 965220-965367 bp Feature: domain Description: COG2085 Location: 965220-965367 bp Feature: gene Location: 1385831-1386262 bp Feature: gene Location: 1386177-1386602 bp Feature: gene Location: 1386556-1388079 bp Ori: ARW86659.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386829-1387561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 386829-1 387561 bp Feature: domain Description: GIIM Note: maturase Location: 1387636-1387834 bp Feature: domain Description: GIIM Note: maturase Location: 1 387636-1 387834 bp Feature: gene Location: 1388160-1388648 bp Feature: domain Description: PHA02517 Location: 1388163-1388637 bp Feature: domain Description: PHA0251 7 Location: 1 3881 63-1 388637 bp Feature: gene Location: 1389037-1389690 bp Feature: domain Description: DUF3387 Location: 1389040-1389679 bp Feature: domain Description: DUF3387 Location: 1 389040-1 389679 bp Feature: gene Location: 2341607-2343517 bp Feature: gene Location: 2343559-2344038 bp Feature: domain Description: PHA02517 Location: 2343562-2344036 bp Feature: domain Description: PHA0251 7 Location: 2343562-2344036 bp Feature: gene Location: 2344122-2345645 bp Ori: ARW87543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2344395-2345127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2344395-23451 27 bp Feature: domain Description: GIIM Note: maturase Location: 2345202-2345400 bp Feature: domain Description: GIIM Note: maturase Location: 2345202-2345400 bp Feature: gene Location: 2345599-2346024 bp Feature: gene Location: 2345939-2346310 bp Feature: gene Location: 4271071-4271976 bp Feature: gene Location: 4271950-4272237 bp Feature: gene Location: 4272462-4273001 bp Ori: ARW89265.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4272792-4272870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4272792-4272870 bp Feature: gene Location: 4273029-4273550 bp Ori: ARW89266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4273035-4273317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4273035-427331 7 bp Feature: domain Description: GIIM Note: maturase Location: 4273365-4273545 bp Feature: domain Description: GIIM Note: maturase Location: 4273365-4273545 bp Feature: gene Location: 4273872-4274060 bp Feature: gene Location: 4274133-4275362 bp Ori: ARW89997.1 Feature: domain Description: YesM Location: 4274613-4275354 bp Feature: domain Description: YesM Location: 427461 3-4275354 bp Feature: gene Location: 4578554-4578793 bp Ori: ARW89564.1 Feature: domain Description: DUF1016_N Location: 4578611-4578788 bp Feature: domain Description: DUF1 01 6_N Location: 457861 1 -4578788 bp Feature: gene Location: 4578833-4579312 bp Feature: domain Description: PHA02517 Location: 4578836-4579310 bp Feature: domain Description: PHA0251 7 Location: 4578836-457931 0 bp Feature: gene Location: 4579396-4580919 bp Ori: ARW89565.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4579669-4580401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4579669-4580401 bp Feature: domain Description: GIIM Note: maturase Location: 4580476-4580674 bp Feature: domain Description: GIIM Note: maturase Location: 4580476-4580674 bp Feature: gene Location: 4580873-4581298 bp Feature: gene Location: 4581213-4581584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme ), DUF3387 (pfam11867), YesM (COG2972), DUF1016_N (pfam17761)

Seq: CP021533.1 Escherichia coli strain AR_0149 plasmid tig00000220, complete sequence (48528 bp)
Overview 1 RT 1: 10469-15679 bp Neighborhood of RT #1 [10469, 15679] psiB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 10469-10903 bp Ori: ARW90068.1 Gene: psiB Feature: domain Description: psiB Location: 10472-10898 bp Feature: domain Description: psiB Location: 10472 -10898 bp Feature: gene Location: 10956-12245 bp Feature: gene Location: 12428-14329 bp Ori: ARW90032.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12695-13526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 695-1352 6 bp Feature: domain Description: Intron_maturas2 Location: 13640-13898 bp Feature: domain Description: Intron_maturas2 Location: 13640-13898 bp Feature: domain Description: HNHc Note: nucleases Location: 14072-14234 bp Feature: domain Description: HNHc Note: nucleases Location: 14072 -142 34 bp Feature: gene Location: 14978-15184 bp Feature: gene Location: 15365-15679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psiB (PRK13701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)