myRT

myRT report for GCA_002180135.1_ASM218013v1

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Seq: CP021684.1 Escherichia coli strain AR_0162 plasmid tig00008015, complete sequence (84929 bp)
Overview 1 RT 1: 40357-44594 bp Neighborhood of RT #1 [40357, 44599] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 40357-40818 bp Feature: gene Location: 40819-41055 bp Feature: gene Location: 41772-43673 bp Ori: ARX17007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42039-42870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42039-42870 bp Feature: domain Description: Intron_maturas2 Location: 42984-43242 bp Feature: domain Description: Intron_maturas2 Location: 42984-43242 bp Feature: domain Description: HNHc Note: nucleases Location: 43416-43578 bp Feature: domain Description: HNHc Note: nucleases Location: 4341 6-43578 bp Feature: gene Location: 43823-44308 bp Ori: ARX17008.1 Feature: domain Description: PRK13732 Location: 43826-44306 bp Feature: domain Description: PRK1 3732 Location: 43826-44306 bp Feature: gene Location: 44366-44599 bp Ori: ARX17009.1 Feature: domain Description: DUF905 Location: 44396-44594 bp Feature: domain Description: DUF905 Location: 44396-44594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP021680.1 Escherichia coli strain AR_0162 plasmid tig00002623, complete sequence (23332 bp)
Overview 1 RT 1: 13937-17442 bp Neighborhood of RT #1 [13937, 17733] COG2085 PHA02517 RVT-GII InsE HTH_23 Feature: gene Location: 13937-14350 bp Ori: ARX12238.1 Feature: domain Description: COG2085 Location: 14036-14183 bp Feature: domain Description: COG2 085 Location: 14036-14183 bp Feature: gene Location: 14277-14763 bp Feature: domain Description: PHA02517 Location: 14280-14346 bp Feature: domain Description: PHA02 517 Location: 142 80-14346 bp Feature: gene Location: 14844-15700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14847-15183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14847-15183 bp Feature: gene Location: 16653-17092 bp Feature: gene Location: 17019-17733 bp Feature: domain Description: InsE Location: 17058-17271 bp Feature: domain Description: InsE Location: 17058-172 71 bp Feature: domain Description: HTH_23 Location: 17343-17442 bp Feature: domain Description: HTH_2 3 Location: 17343-17442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, InsE (COG2963), HTH_23 (pfam13384)

Seq: CP021683.1 Escherichia coli strain AR_0162, complete genome (4810234 bp)
Overview 1 RT 1: 188339-191364 bp 2 RT 2: 493516-497807 bp 3 RT 3: 2387418-2392121 bp 4 RT 4: 3342886-3345821 bp 5 RT 5: 3801645-3804807 bp 6 RT 6: 3817323-3824386 bp Neighborhood of RT #1 [188339, 191369] RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [493516, 497807] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2387418, 2392121] RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3342886, 3345821] RVT-GII GIIM PHA02517 Neighborhood of RT #5 [3801645, 3804807] COG2085 PHA02517 RVT-GII GIIM Neighborhood of RT #6 [3817323, 3824493] RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 188339-188710 bp Feature: gene Location: 188625-189050 bp Feature: gene Location: 189004-190527 bp Ori: ARX12581.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189277-190009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189277-190009 bp Feature: domain Description: GIIM Note: maturase Location: 190084-190282 bp Feature: domain Description: GIIM Note: maturase Location: 190084-190282 bp Feature: gene Location: 190611-191090 bp Feature: domain Description: PHA02517 Location: 190614-191088 bp Feature: domain Description: PHA02517 Location: 190614-191088 bp Feature: gene Location: 191130-191369 bp Ori: ARX12582.1 Feature: domain Description: DUF1016_N Location: 191187-191364 bp Feature: domain Description: DUF1016_N Location: 191187-1913 64 bp Feature: gene Location: 493516-494745 bp Ori: ARX12875.1 Feature: domain Description: YesM Location: 493996-494737 bp Feature: domain Description: YesM Location: 493 996-49473 7 bp Feature: gene Location: 494818-495006 bp Feature: gene Location: 495328-495849 bp Ori: ARX12877.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 495334-495616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4953 3 4-495616 bp Feature: domain Description: GIIM Note: maturase Location: 495664-495844 bp Feature: domain Description: GIIM Note: maturase Location: 495664-495844 bp Feature: gene Location: 495877-496416 bp Ori: ARX12878.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496207-496285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496207-496285 bp Feature: gene Location: 496641-496928 bp Feature: gene Location: 496902-497807 bp Feature: gene Location: 2387418-2387789 bp Feature: gene Location: 2387704-2388129 bp Feature: gene Location: 2388083-2389606 bp Ori: ARX14577.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2388356-2389088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 883 56-23 89088 bp Feature: domain Description: GIIM Note: maturase Location: 2389163-2389361 bp Feature: domain Description: GIIM Note: maturase Location: 23 89163 -23 893 61 bp Feature: gene Location: 2389690-2390169 bp Feature: domain Description: PHA02517 Location: 2389693-2390167 bp Feature: domain Description: PHA02517 Location: 23 89693 -23 90167 bp Feature: gene Location: 2390211-2392121 bp Feature: gene Location: 3342886-3343257 bp Feature: gene Location: 3343172-3343597 bp Feature: gene Location: 3343551-3345074 bp Ori: ARX15463.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3343824-3344556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 43 824-3 3 44556 bp Feature: domain Description: GIIM Note: maturase Location: 3344631-3344829 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 4463 1-3 3 44829 bp Feature: gene Location: 3345158-3345637 bp Feature: domain Description: PHA02517 Location: 3345161-3345635 bp Feature: domain Description: PHA02517 Location: 3 3 45161-3 3 4563 5 bp Feature: gene Location: 3345603-3345821 bp Feature: gene Location: 3801645-3802058 bp Ori: ARX15876.1 Feature: domain Description: COG2085 Location: 3801744-3801891 bp Feature: domain Description: COG2085 Location: 3 801744-3 801891 bp Feature: gene Location: 3801985-3802472 bp Feature: domain Description: PHA02517 Location: 3801988-3802159 bp Feature: domain Description: PHA02517 Location: 3 801988-3 802159 bp Feature: gene Location: 3802553-3804076 bp Ori: ARX15877.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3802826-3803558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 802826-3 803 558 bp Feature: domain Description: GIIM Note: maturase Location: 3803633-3803831 bp Feature: domain Description: GIIM Note: maturase Location: 3 803 63 3 -3 803 83 1 bp Feature: gene Location: 3804030-3804455 bp Feature: gene Location: 3804370-3804807 bp Feature: gene Location: 3817323-3817694 bp Feature: gene Location: 3817609-3818034 bp Feature: gene Location: 3817988-3819511 bp Ori: ARX15890.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3818261-3818993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 818261-3 818993 bp Feature: domain Description: GIIM Note: maturase Location: 3819068-3819266 bp Feature: domain Description: GIIM Note: maturase Location: 3 819068-3 819266 bp Feature: gene Location: 3819595-3820074 bp Feature: domain Description: PHA02517 Location: 3819598-3820072 bp Feature: domain Description: PHA02517 Location: 3 819598-3 820072 bp Feature: gene Location: 3820305-3821218 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3820314-3820566 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3 8203 14-3 820566 bp Feature: gene Location: 3821673-3822605 bp Ori: ARX15891.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3821775-3822369 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 821775-3 8223 69 bp Feature: gene Location: 3822607-3823575 bp Feature: gene Location: 3824221-3824493 bp Ori: ARX15893.1 Feature: domain Description: PRK09678 Location: 3824230-3824386 bp Feature: domain Description: PRK09678 Location: 3 82423 0-3 8243 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), COG2085 (Predicted dinucleotide-binding enzyme ), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)