myRT

myRT report for GCA_002192415.1_ASM219241v1

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Seq: CP021780.1 Paenibacillus donghaensis strain KCTC 13049 chromosome, complete genome (8542333 bp)
Overview 1 RT 1: 104914-110245 bp 2 RT 2: 153032-161059 bp 3 RT 3: 176203-183300 bp 4 RT 4: 663165-668777 bp 5 RT 5: 1563730-1568252 bp 6 RT 6: 1643007-1647922 bp 7 RT 7: 1916789-1921887 bp 8 RT 8: 5019055-5025300 bp 9 RT 9: 5117388-5122629 bp 10 RT 10: 7000673-7004749 bp 11 RT 11: 7749985-7759286 bp 12 RT 12: 8151047-8158080 bp Neighborhood of RT #1 [104914, 110367] RVT-GII GIIM DDE_Tnp_1 DDE_3 Neighborhood of RT #2 [153032, 161862] retropepsin_like_bacteria Prenyltrans RVT-GII VanZ Beta-lactamase Neighborhood of RT #3 [176203, 183488] PBP1_ABC_ligand_binding_like_12 RVT-GII GIIM RVT-GII GIIM NGN rfaH ACPS ACPS Neighborhood of RT #4 [663165, 669081] PRK05803 RVT-GII GIIM RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #5 [1563730, 1568266] MalY RVT-GII NagA GlcN6P_deaminase Neighborhood of RT #6 [1643007, 1647933] DDE_Tnp_1 RVT-GII PBP2_Maltose_binding_like UgpA Neighborhood of RT #7 [1916789, 1922132] RVT-GII Aes Neighborhood of RT #8 [5019055, 5025317] YesN YesN YesM RVT-GII DUF2207 BaeS Neighborhood of RT #9 [5117388, 5122646] GIIM RVT-GII DEDD_Tnp_IS110 RVT-GII YmaF Neighborhood of RT #10 [7000673, 7004749] MATE_MepA_like FlxA RVT-UG2 YjzC Neighborhood of RT #11 [7749985, 7759330] IclR RVT-GII RVT-GII GIIM PRK09277 Amidase_6 Neighborhood of RT #12 [8151047, 8158080] xerC AmpC RVT-GII MhpC Feature: gene Location: 104914-105159 bp Feature: gene Location: 105443-106704 bp Feature: gene Location: 107248-108486 bp Ori: ASA19461.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107452-108109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07452-1 081 09 bp Feature: domain Description: GIIM Note: maturase Location: 108190-108409 bp Feature: domain Description: GIIM Note: maturase Location: 1 081 90-1 08409 bp Feature: gene Location: 108619-109599 bp Ori: ASA19462.1 Feature: domain Description: DDE_Tnp_1 Location: 108622-109309 bp Feature: domain Description: DDE_Tnp_1 Location: 1 08622-1 09309 bp Feature: gene Location: 109741-110367 bp Feature: domain Description: DDE_3 Location: 109795-110245 bp Feature: domain Description: DDE_3 Location: 1 09795-1 1 0245 bp Feature: gene Location: 153032-153418 bp Ori: ASA19489.1 Feature: domain Description: retropepsin_like_bacteria Location: 153113-153362 bp Feature: domain Description: retropepsin_like_bacteria Location: 1 531 1 3-1 53362 bp Feature: gene Location: 154683-155615 bp Ori: ASA19490.1 Feature: domain Description: Prenyltrans Location: 155043-155112 bp Feature: domain Description: Prenyltrans Location: 1 55043-1 551 1 2 bp Feature: gene Location: 156483-158276 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156774-157473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 56774-1 57473 bp Feature: gene Location: 159036-159692 bp Ori: ASA19491.1 Feature: domain Description: VanZ Location: 159150-159540 bp Feature: domain Description: VanZ Location: 1 591 50-1 59540 bp Feature: gene Location: 159940-161862 bp Ori: ASA19492.1 Feature: domain Description: Beta-lactamase Location: 160087-161059 bp Feature: domain Description: Beta-lactamase Location: 1 60087-1 61 059 bp Feature: gene Location: 176203-177402 bp Ori: ASA19506.1 Feature: domain Description: PBP1_ABC_ligand_binding_like_12 Location: 176335-177358 bp Feature: domain Description: PBP1 _ABC_ligand_binding_like_1 2 Location: 1 76335-1 77358 bp Feature: gene Location: 177839-178105 bp Feature: gene Location: 178336-179598 bp Ori: ASA19507.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178531-179152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 78531 -1 791 52 bp Feature: domain Description: GIIM Note: maturase Location: 179203-179413 bp Feature: domain Description: GIIM Note: maturase Location: 1 79203-1 7941 3 bp Feature: gene Location: 180142-181380 bp Ori: ASA19508.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180346-181003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 80346-1 81 003 bp Feature: domain Description: GIIM Note: maturase Location: 181084-181303 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 084-1 81 303 bp Feature: gene Location: 181770-182342 bp Ori: ASA19509.1 Feature: domain Description: NGN Location: 181776-182025 bp Feature: domain Description: NGN Location: 1 81 776-1 82025 bp Feature: domain Description: rfaH Location: 182139-182313 bp Feature: domain Description: rfaH Location: 1 821 39-1 8231 3 bp Feature: gene Location: 182715-183488 bp Ori: ASA19510.1 Feature: domain Description: ACPS Location: 182847-182946 bp Feature: domain Description: ACPS Location: 1 82847-1 82946 bp Feature: domain Description: ACPS Location: 183096-183300 bp Feature: domain Description: ACPS Location: 1 83096-1 83300 bp Feature: gene Location: 663165-663866 bp Ori: ASA19816.1 Feature: domain Description: PRK05803 Location: 663177-663861 bp Feature: domain Description: PRK05803 Location: 6631 77-663861 bp Feature: gene Location: 664013-664279 bp Feature: gene Location: 664510-665772 bp Ori: ASA19817.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 664705-665326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 664705-665326 bp Feature: domain Description: GIIM Note: maturase Location: 665377-665587 bp Feature: domain Description: GIIM Note: maturase Location: 665377-665587 bp Feature: gene Location: 666316-667554 bp Ori: ASA19818.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666520-667177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666520-6671 77 bp Feature: domain Description: GIIM Note: maturase Location: 667258-667477 bp Feature: domain Description: GIIM Note: maturase Location: 667258-667477 bp Feature: gene Location: 667717-667950 bp Feature: gene Location: 668126-669081 bp Feature: domain Description: DDE_Tnp_1 Location: 668459-668777 bp Feature: domain Description: DDE_Tnp_1 Location: 668459-668777 bp Feature: gene Location: 1563730-1564485 bp Feature: gene Location: 1564702-1565883 bp Ori: ASA26210.1 Feature: domain Description: MalY Location: 1564711-1565860 bp Feature: domain Description: MalY Location: 1 56471 1 -1 565860 bp Feature: gene Location: 1565998-1566243 bp Ori: ASA20501.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566028-1566139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 566028-1 5661 39 bp Feature: gene Location: 1566354-1567550 bp Ori: ASA20502.1 Gene: nagA Feature: domain Description: NagA Location: 1566402-1567524 bp Feature: domain Description: NagA Location: 1 566402-1 567524 bp Feature: gene Location: 1567538-1568266 bp Ori: ASA20503.1 Gene: nagB Feature: domain Description: GlcN6P_deaminase Location: 1567574-1568252 bp Feature: domain Description: GlcN6P_deaminase Location: 1 567574-1 568252 bp Feature: gene Location: 1643007-1644329 bp Ori: ASA20568.1 Feature: domain Description: DDE_Tnp_1 Location: 1643340-1643964 bp Feature: domain Description: DDE_Tnp_1 Location: 1 643340-1 643964 bp Feature: gene Location: 1644473-1644676 bp Feature: gene Location: 1644766-1644891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1644769-1644880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 644769-1 644880 bp Feature: gene Location: 1645216-1646550 bp Ori: ASA26218.1 Feature: domain Description: PBP2_Maltose_binding_like Location: 1645408-1646521 bp Feature: domain Description: PBP2_Maltose_binding_like Location: 1 645408-1 646521 bp Feature: gene Location: 1646557-1647933 bp Ori: ASA20570.1 Feature: domain Description: UgpA Location: 1647004-1647922 bp Feature: domain Description: UgpA Location: 1 647004-1 647922 bp Feature: gene Location: 1916789-1917157 bp Feature: gene Location: 1917281-1917748 bp Feature: gene Location: 1918528-1920321 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1918819-1919518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 881 9-1 91 951 8 bp Feature: gene Location: 1921135-1921368 bp Feature: gene Location: 1921512-1922132 bp Ori: ASA20746.1 Feature: domain Description: Aes Location: 1921515-1921887 bp Feature: domain Description: Aes Location: 1 921 51 5-1 921 887 bp Feature: gene Location: 5019055-5020473 bp Ori: ASA23449.1 Feature: domain Description: YesN Location: 5019058-5019511 bp Feature: domain Description: YesN Location: 501 9058-501 951 1 bp Feature: domain Description: YesN Location: 5019976-5020459 bp Feature: domain Description: YesN Location: 501 9976-5020459 bp Feature: gene Location: 5020466-5022271 bp Ori: ASA23450.1 Feature: domain Description: YesM Location: 5021012-5022257 bp Feature: domain Description: YesM Location: 5021 01 2-5022257 bp Feature: gene Location: 5022830-5023198 bp Ori: ASA23451.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5023136-5023196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50231 36-50231 96 bp Feature: gene Location: 5023708-5024262 bp Ori: ASA23452.1 Feature: domain Description: DUF2207 Location: 5023894-5024155 bp Feature: domain Description: DUF2207 Location: 5023894-50241 55 bp Feature: gene Location: 5024337-5025317 bp Ori: ASA26439.1 Feature: domain Description: BaeS Location: 5024400-5025300 bp Feature: domain Description: BaeS Location: 5024400-5025300 bp Feature: gene Location: 5117388-5117948 bp Feature: gene Location: 5118551-5119048 bp Ori: ASA23516.1 Feature: domain Description: GIIM Note: maturase Location: 5118656-5118890 bp Feature: domain Description: GIIM Note: maturase Location: 51 1 8656-51 1 8890 bp Feature: gene Location: 5119020-5119244 bp Ori: ASA23517.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5119029-5119227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 9029-51 1 9227 bp Feature: gene Location: 5119631-5120927 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 5119700-5120075 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 51 1 9700-51 20075 bp Feature: gene Location: 5121009-5121649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5121204-5121351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 21 204-51 21 351 bp Feature: gene Location: 5121879-5122145 bp Feature: gene Location: 5122287-5122646 bp Ori: ASA23519.1 Feature: domain Description: YmaF Location: 5122341-5122629 bp Feature: domain Description: YmaF Location: 51 22341 -51 22629 bp Feature: gene Location: 7000673-7001326 bp Feature: domain Description: MATE_MepA_like Location: 7000682-7001279 bp Feature: domain Description: MATE_MepA_like Location: 7000682-7001 279 bp Feature: gene Location: 7001440-7001820 bp Ori: ASA24943.1 Feature: domain Description: FlxA Location: 7001497-7001659 bp Feature: domain Description: FlxA Location: 7001 497-7001 659 bp Feature: gene Location: 7002344-7003654 bp Ori: ASA26555.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 7002521-7003349 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 7002521 -7003349 bp Feature: gene Location: 7004184-7004384 bp Ori: ASA24944.1 Feature: domain Description: YjzC Location: 7004196-7004367 bp Feature: domain Description: YjzC Location: 70041 96-7004367 bp Feature: gene Location: 7004510-7004749 bp Feature: gene Location: 7749985-7750728 bp Ori: ASA25542.1 Feature: domain Description: IclR Location: 7750012-7750714 bp Feature: domain Description: IclR Location: 775001 2-775071 4 bp Feature: gene Location: 7750876-7751142 bp Feature: gene Location: 7751374-7752635 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7751569-7752184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7751 569-77521 84 bp Feature: gene Location: 7753179-7754417 bp Ori: ASA25543.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7753383-7754040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7753383-7754040 bp Feature: domain Description: GIIM Note: maturase Location: 7754121-7754340 bp Feature: domain Description: GIIM Note: maturase Location: 77541 21 -7754340 bp Feature: gene Location: 7755347-7758091 bp Ori: ASA25544.1 Gene: acnA Feature: domain Description: PRK09277 Location: 7755359-7758053 bp Feature: domain Description: PRK09277 Location: 7755359-7758053 bp Feature: gene Location: 7758311-7759330 bp Ori: ASA25545.1 Feature: domain Description: Amidase_6 Location: 7758836-7759286 bp Feature: domain Description: Amidase_6 Location: 7758836-7759286 bp Feature: gene Location: 8151047-8151928 bp Feature: domain Description: xerC Location: 8151089-8151878 bp Feature: domain Description: xerC Location: 81 51 089-81 51 878 bp Feature: gene Location: 8152057-8154060 bp Ori: ASA26626.1 Feature: domain Description: AmpC Location: 8152120-8153092 bp Feature: domain Description: AmpC Location: 81 521 20-81 53092 bp Feature: gene Location: 8154821-8156614 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8155112-8155811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 551 1 2-81 5581 1 bp Feature: gene Location: 8156703-8157761 bp Ori: ASA25846.1 Feature: domain Description: MhpC Location: 8156937-8157753 bp Feature: domain Description: MhpC Location: 81 56937-81 57753 bp Feature: gene Location: 8157826-8158080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), DDE_3 (pfam13358), retropepsin_like_bacteria (cd05483), Prenyltrans (pfam00432), VanZ (pfam04892), Beta-lactamase (pfam00144), PBP1_ABC_ligand_binding_like_12, NGN (smart00738)
rfaH (PRK09014), ACPS (pfam01648), PRK05803 (RNA polymerase sporulation sigma factor SigK), MalY (COG1168), NagA (COG1820), GlcN6P_deaminase (cd01399), PBP2_Maltose_binding_like (cd13586), UgpA (COG1175), Aes (COG0657), YesN (COG4753)
YesM (COG2972), DUF2207 (pfam09972), BaeS (COG0642), DEDD_Tnp_IS110 (pfam01548), YmaF (pfam12788), MATE_MepA_like (cd13143), FlxA (pfam14282), RVT-UG2, YjzC (pfam14168), IclR (pfam01614)
PRK09277 (aconitate hydratase AcnA), Amidase_6 (pfam12671), xerC (PRK01287), AmpC (COG1680), MhpC (COG0596)