myRT

myRT report for GCA_002192495.1_ASM219249v1

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Seq: CP021775.1 Pseudomonas aeruginosa strain Pa58 chromosome, complete genome (7241575 bp)
Overview 1 RT 1: 699549-709857 bp 2 RT 2: 726115-734308 bp 3 RT 3: 1203334-1210144 bp 4 RT 4: 2911413-2914889 bp Neighborhood of RT #1 [699549, 709859] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [726115, 734322] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [1203334, 1210341] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Neighborhood of RT #4 [2911413, 2914927] DUF772 RVT-GII GIIM DDE_Tnp_1 DUF488 Feature: gene Location: 699549-700670 bp Ori: ASA13303.1 Feature: domain Description: COG3177 Location: 699567-700659 bp Feature: domain Description: COG31 77 Location: 699567-700659 bp Feature: gene Location: 700932-701093 bp Feature: gene Location: 701396-703081 bp Ori: ASA13305.1 Gene: ltrA Feature: domain Description: RVT_N Location: 701453-701693 bp Feature: domain Description: RVT_N Location: 701 453-701 693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701741-702377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 741 -702377 bp Feature: domain Description: GIIM Note: maturase Location: 702431-702662 bp Feature: domain Description: GIIM Note: maturase Location: 702431 -702662 bp Feature: domain Description: HNH Note: nucleases Location: 702914-703052 bp Feature: domain Description: HNH Note: nucleases Location: 70291 4-703052 bp Feature: gene Location: 704162-707899 bp Ori: ASA13306.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 704270-704927 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 704270-704927 bp Feature: domain Description: PRK09776 Location: 705140-705611 bp Feature: domain Description: PRK09776 Location: 7051 40-70561 1 bp Feature: domain Description: PAS Location: 705656-706193 bp Feature: domain Description: PAS Location: 705656-7061 93 bp Feature: domain Description: PRK10060 Location: 706202-707849 bp Feature: domain Description: PRK1 0060 Location: 706202-707849 bp Feature: gene Location: 708006-709859 bp Ori: ASA13307.1 Feature: domain Description: PRK05658 Location: 708018-709857 bp Feature: domain Description: PRK05658 Location: 70801 8-709857 bp Feature: gene Location: 726115-727407 bp Ori: ASA13324.1 Feature: domain Description: PRK10770 Location: 726205-727399 bp Feature: domain Description: PRK1 0770 Location: 726205-727399 bp Feature: gene Location: 727388-730189 bp Ori: ASA13325.1 Feature: domain Description: LptD Location: 727583-730175 bp Feature: domain Description: LptD Location: 727583-7301 75 bp Feature: gene Location: 730322-732034 bp Ori: ASA13326.1 Gene: ltrA Feature: domain Description: RVT_N Location: 730379-730622 bp Feature: domain Description: RVT_N Location: 730379-730622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730667-731303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730667-731 303 bp Feature: domain Description: YkfC Location: 731513-731663 bp Feature: domain Description: YkfC Location: 731 51 3-731 663 bp Feature: domain Description: HNH Note: nucleases Location: 731840-731978 bp Feature: domain Description: HNH Note: nucleases Location: 731 840-731 978 bp Feature: gene Location: 732179-732433 bp Feature: gene Location: 733306-734322 bp Ori: ASA13327.1 Feature: domain Description: COG3178 Location: 733309-734308 bp Feature: domain Description: COG31 78 Location: 733309-734308 bp Feature: gene Location: 1203334-1204161 bp Ori: ASA13742.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 1203364-1204078 bp Feature: domain Description: ABC_phnC Location: 1 203364-1 204078 bp Feature: gene Location: 1204504-1205014 bp Feature: domain Description: DUF772 Location: 1204654-1204849 bp Feature: domain Description: DUF772 Location: 1 204654-1 204849 bp Feature: gene Location: 1205534-1206802 bp Ori: ASA13743.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1205747-1206404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 205747-1 206404 bp Feature: domain Description: GIIM Note: maturase Location: 1206482-1206704 bp Feature: domain Description: GIIM Note: maturase Location: 1 206482-1 206704 bp Feature: gene Location: 1206952-1207278 bp Feature: gene Location: 1208797-1210341 bp Ori: ASA13744.1 Feature: domain Description: CHD Location: 1209013-1209427 bp Feature: domain Description: CHD Location: 1 20901 3-1 209427 bp Feature: domain Description: CHD Location: 1209655-1210144 bp Feature: domain Description: CHD Location: 1 209655-1 21 01 44 bp Feature: gene Location: 2911413-2911925 bp Feature: domain Description: DUF772 Location: 2911563-2911749 bp Feature: domain Description: DUF772 Location: 291 1 563-291 1 749 bp Feature: gene Location: 2911961-2912056 bp Feature: gene Location: 2912445-2913713 bp Ori: ASA15309.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2912658-2913315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 2658-291 331 5 bp Feature: domain Description: GIIM Note: maturase Location: 2913393-2913615 bp Feature: domain Description: GIIM Note: maturase Location: 291 3393-291 361 5 bp Feature: gene Location: 2913773-2914243 bp Feature: domain Description: DDE_Tnp_1 Location: 2913779-2914193 bp Feature: domain Description: DDE_Tnp_1 Location: 291 3779-291 41 93 bp Feature: gene Location: 2914496-2914927 bp Ori: ASA15310.1 Feature: domain Description: DUF488 Location: 2914535-2914889 bp Feature: domain Description: DUF488 Location: 291 4535-291 4889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302), DDE_Tnp_1 (pfam01609), DUF488 (pfam04343)