myRT

myRT report for GCA_002196475.1_ASM219647v1

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Seq: CP021840.1 Escherichia coli strain EC974 chromosome, complete genome (5167701 bp)
Overview 1 RT 1: 3963342-3966488 bp 2 RT 2: 4551012-4554994 bp Neighborhood of RT #1 [3963342, 3966586] Rhs_assc_core RVT-GII GIIM YhhI YhhI YhhI Neighborhood of RT #2 [4551012, 4555020] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 3963342-3963437 bp Feature: domain Description: Rhs_assc_core Location: 3963354-3963435 bp Feature: domain Description: Rhs_assc_core Location: 3963354-3963435 bp Feature: gene Location: 3963443-3963502 bp Feature: gene Location: 3963794-3964828 bp Ori: ASA61933.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964220-3964811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964220-396481 1 bp Feature: gene Location: 3964964-3965244 bp Feature: domain Description: GIIM Note: maturase Location: 3964970-3965084 bp Feature: domain Description: GIIM Note: maturase Location: 3964970-3965084 bp Feature: gene Location: 3965468-3966586 bp Ori: ASA61934.1 Feature: domain Description: YhhI Location: 3965471-3965816 bp Feature: domain Description: YhhI Location: 3965471 -396581 6 bp Feature: domain Description: YhhI Location: 3965873-3966227 bp Feature: domain Description: YhhI Location: 3965873-3966227 bp Feature: domain Description: YhhI Location: 3966248-3966488 bp Feature: domain Description: YhhI Location: 3966248-3966488 bp Feature: gene Location: 4551012-4552016 bp Ori: ASA63230.1 Feature: domain Description: Asparaginase_2 Location: 4551075-4552008 bp Feature: domain Description: Asparaginase_2 Location: 4551 075-4552008 bp Feature: gene Location: 4552201-4552403 bp Feature: gene Location: 4552451-4553013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4552757-4552859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4552757-4552859 bp Feature: gene Location: 4553238-4553444 bp Feature: gene Location: 4553659-4555020 bp Ori: ASA62478.1 Feature: domain Description: DcuC Location: 4553662-4554994 bp Feature: domain Description: DcuC Location: 4553662-4554994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rhs_assc_core (TIGR03696), RVT-GII, GIIM (pfam08388), YhhI (COG5433), Asparaginase_2 (pfam01112), DcuC (TIGR00771)

Seq: CP021842.1 Escherichia coli strain EC974 plasmid pEC974-2, complete sequence (92385 bp)
Overview 1 RT 1: 28837-32066 bp 2 RT 2: 87462-90704 bp Neighborhood of RT #1 [28837, 32066] PRK11114 RVT-GII RVT-GII GIIM InsE Neighborhood of RT #2 [87462, 90704] TraH PHA02517 RVT-GII GIIM Feature: gene Location: 28837-29292 bp Feature: domain Description: PRK11114 Location: 28879-29275 bp Feature: domain Description: PRK11114 Location: 2 8879-2 92 75 bp Feature: gene Location: 29632-29811 bp Feature: gene Location: 30036-30680 bp Ori: ASA63414.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30324-30675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3032 4-30675 bp Feature: gene Location: 30687-31382 bp Ori: ASA63415.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30690-30942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30690-30942 bp Feature: domain Description: GIIM Note: maturase Location: 30990-31221 bp Feature: domain Description: GIIM Note: maturase Location: 30990-312 2 1 bp Feature: gene Location: 31457-31641 bp Feature: gene Location: 31742-32066 bp Ori: ASA63416.1 Feature: domain Description: InsE Location: 31745-32066 bp Feature: domain Description: InsE Location: 31745-32 066 bp Feature: gene Location: 87462-87911 bp Ori: ASA63462.1 Feature: domain Description: TraH Location: 87561-87879 bp Feature: domain Description: TraH Location: 87561-87879 bp Feature: gene Location: 87908-88375 bp Feature: domain Description: PHA02517 Location: 87911-88370 bp Feature: domain Description: PHA02 517 Location: 87911-88370 bp Feature: gene Location: 88456-89979 bp Ori: ASA63463.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88729-89461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8872 9-89461 bp Feature: domain Description: GIIM Note: maturase Location: 89536-89734 bp Feature: domain Description: GIIM Note: maturase Location: 89536-89734 bp Feature: gene Location: 90050-90358 bp Feature: gene Location: 90273-90704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB), RVT-GII, GIIM (pfam08388), InsE (COG2963), TraH (pfam06122), PHA02517 (putative transposase OrfB; Reviewed)