myRT

myRT report for GCA_002196535.1_ASM219653v1

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Seq: CP017721.1 Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_01, complete sequence (280421 bp)
Overview 1 RT 1: 72830-84137 bp 2 RT 2: 238948-243110 bp 3 RT 3: 254256-259146 bp Neighborhood of RT #1 [72830, 84163] PRK09956 RVT-GII SR_Res_par HTH_7 COG4644 DDE_Tnp_Tn3 RVT-GII Glyco_hydro_79n SR_Res_par HTH_7 Neighborhood of RT #2 [238948, 243157] CaiF_GrlA RVT-GII Intron_maturas2 HNHc COG4683 HTH_XRE Neighborhood of RT #3 [254256, 259718] RVT_N RVT-GII PBP2_GluR0 rve Feature: gene Location: 72830-73105 bp Feature: gene Location: 73102-73923 bp Ori: ASA54047.1 Feature: domain Description: PRK09956 Location: 73105-73912 bp Feature: domain Description: PRK09956 Location: 731 05-7391 2 bp Feature: gene Location: 74045-75379 bp Ori: ASA54048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74330-75017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74330-7501 7 bp Feature: gene Location: 76002-76625 bp Ori: ASA54049.1 Feature: domain Description: SR_Res_par Location: 76017-76443 bp Feature: domain Description: SR_Res_par Location: 7601 7-76443 bp Feature: domain Description: HTH_7 Location: 76479-76599 bp Feature: domain Description: HTH_7 Location: 76479-76599 bp Feature: gene Location: 76655-79645 bp Ori: ASA54050.1 Feature: domain Description: COG4644 Location: 76730-77030 bp Feature: domain Description: COG4644 Location: 76730-77030 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 78413-79583 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 7841 3-79583 bp Feature: gene Location: 80195-81529 bp Ori: ASA54051.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80480-81167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80480-81 1 67 bp Feature: gene Location: 81779-83359 bp Ori: ASA54052.1 Feature: domain Description: Glyco_hydro_79n Location: 82064-82889 bp Feature: domain Description: Glyco_hydro_79n Location: 82064-82889 bp Feature: gene Location: 83540-84163 bp Ori: ASA54053.1 Feature: domain Description: SR_Res_par Location: 83555-83981 bp Feature: domain Description: SR_Res_par Location: 83555-83981 bp Feature: domain Description: HTH_7 Location: 84017-84137 bp Feature: domain Description: HTH_7 Location: 8401 7-841 37 bp Feature: gene Location: 238948-239445 bp Ori: ASA54208.1 Feature: domain Description: CaiF_GrlA Location: 238984-239314 bp Feature: domain Description: CaiF_GrlA Location: 238984-23931 4 bp Feature: gene Location: 239740-240015 bp Feature: gene Location: 241139-242098 bp Ori: ASA54210.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241166-241361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 1 66-241 361 bp Feature: domain Description: Intron_maturas2 Location: 241463-241697 bp Feature: domain Description: Intron_maturas2 Location: 241 463-241 697 bp Feature: domain Description: HNHc Note: nucleases Location: 241865-242054 bp Feature: domain Description: HNHc Note: nucleases Location: 241 865-242054 bp Feature: gene Location: 242506-242856 bp Ori: ASA54211.1 Feature: domain Description: COG4683 Location: 242509-242851 bp Feature: domain Description: COG4683 Location: 242509-242851 bp Feature: gene Location: 242858-243157 bp Ori: ASA54212.1 Feature: domain Description: HTH_XRE Location: 242951-243110 bp Feature: domain Description: HTH_XRE Location: 242951 -2431 1 0 bp Feature: gene Location: 254256-254561 bp Feature: gene Location: 254645-255356 bp Feature: gene Location: 256074-256941 bp Feature: domain Description: RVT_N Location: 256137-256380 bp Feature: domain Description: RVT_N Location: 2561 37-256380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256425-256620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256425-256620 bp Feature: gene Location: 257318-258373 bp Ori: ASA54220.1 Feature: domain Description: PBP2_GluR0 Location: 257393-258371 bp Feature: domain Description: PBP2_GluR0 Location: 257393-258371 bp Feature: gene Location: 258711-259718 bp Feature: domain Description: rve Location: 258786-259146 bp Feature: domain Description: rve Location: 258786-2591 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09956 (ISNCY family transposase), RVT-GII, SR_Res_par (cd03767), HTH_7 (pfam02796), COG4644 (Transposase and inactivated derivatives, TnpA family ), DDE_Tnp_Tn3 (pfam01526), Glyco_hydro_79n (pfam03662), CaiF_GrlA (pfam07180), Intron_maturas2 (pfam01348), HNHc (smart00507)
COG4683 (Uncharacterized protein ), HTH_XRE (smart00530), RVT_N (pfam13655), PBP2_GluR0 (cd00997), rve (pfam00665)