myRT

myRT report for GCA_002197025.1_ASM219702v1

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Seq: CP021793.1 Sinorhizobium meliloti strain USDA1157 chromosome, complete genome (3791696 bp)
Overview 1 RT 1: 3604881-3609927 bp Neighborhood of RT #1 [3604881, 3609938] CirA RVT-GII GIIM TonB-siderophor PRK07588 Feature: gene Location: 3604881-3606674 bp Feature: domain Description: CirA Location: 3604887-3606618 bp Feature: domain Description: CirA Location: 3604887-360661 8 bp Feature: gene Location: 3606770-3607090 bp Feature: gene Location: 3607223-3608482 bp Ori: ASP53288.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3607439-3608093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3607439-3608093 bp Feature: domain Description: GIIM Note: maturase Location: 3608174-3608390 bp Feature: domain Description: GIIM Note: maturase Location: 36081 74-3608390 bp Feature: gene Location: 3608536-3608766 bp Ori: ASP53289.1 Feature: domain Description: TonB-siderophor Location: 3608560-3608764 bp Feature: domain Description: TonB-siderophor Location: 3608560-3608764 bp Feature: gene Location: 3608778-3609938 bp Ori: ASP53290.1 Feature: domain Description: PRK07588 Location: 3608781-3609927 bp Feature: domain Description: PRK07588 Location: 3608781 -3609927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CirA (COG1629), RVT-GII, GIIM (pfam08388), TonB-siderophor (TIGR01783), PRK07588 (FAD-binding domain)

Seq: CP021795.1 Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence (1700327 bp)
Overview 1 RT 1: 116925-122972 bp 2 RT 2: 627037-629979 bp Neighborhood of RT #1 [116925, 123088] hutH PRK09356 RVT-GII AraJ HTH_ARSR Neighborhood of RT #2 [627037, 629979] MazF MazF RVT-GII GIIM Feature: gene Location: 116925-118460 bp Ori: ASP55107.1 Gene: hutH Feature: domain Description: hutH Location: 116934-118449 bp Feature: domain Description: hutH Location: 116934-118449 bp Feature: gene Location: 118457-119704 bp Ori: ASP55108.1 Feature: domain Description: PRK09356 Location: 118493-119696 bp Feature: domain Description: PRK09356 Location: 118493-119696 bp Feature: gene Location: 119907-121267 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120234-120456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 02 34-12 0456 bp Feature: gene Location: 121443-122627 bp Ori: ASP55109.1 Feature: domain Description: AraJ Location: 121446-122604 bp Feature: domain Description: AraJ Location: 12 1446-12 2 604 bp Feature: gene Location: 122717-123088 bp Ori: ASP55110.1 Feature: domain Description: HTH_ARSR Location: 122774-122972 bp Feature: domain Description: HTH_ARSR Location: 12 2 774-12 2 972 bp Feature: gene Location: 627037-627240 bp Ori: ASP55547.1 Feature: domain Description: MazF Location: 627040-627151 bp Feature: domain Description: MazF Location: 62 7040-62 7151 bp Feature: gene Location: 627240-627587 bp Ori: ASP55548.1 Feature: domain Description: MazF Location: 627243-627576 bp Feature: domain Description: MazF Location: 62 72 43-62 7576 bp Feature: gene Location: 627540-628901 bp Ori: ASP55549.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627867-628482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 7867-62 8482 bp Feature: domain Description: GIIM Note: maturase Location: 628536-628752 bp Feature: domain Description: GIIM Note: maturase Location: 62 8536-62 8752 bp Feature: gene Location: 628955-629283 bp Feature: gene Location: 629677-629979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hutH (TIGR01225), PRK09356 (imidazolonepropionase; Validated), RVT-GII, AraJ (COG2814), HTH_ARSR (smart00418), MazF (COG2337), GIIM (pfam08388)

Seq: CP021794.1 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence (1433621 bp)
Overview 1 RT 1: 785866-791046 bp Neighborhood of RT #1 [785866, 791093] DUF772 DDE_Tnp_1 Transposase_mut RVT-GII PRK07574 Feature: gene Location: 785866-787263 bp Ori: ASP54373.1 Feature: domain Description: DUF772 Location: 786025-786244 bp Feature: domain Description: DUF772 Location: 786025-786244 bp Feature: domain Description: DDE_Tnp_1 Location: 786463-787135 bp Feature: domain Description: DDE_Tnp_1 Location: 786463 -78713 5 bp Feature: gene Location: 787332-787790 bp Feature: domain Description: Transposase_mut Location: 787335-787704 bp Feature: domain Description: Transposase_mut Location: 7873 3 5-787704 bp Feature: gene Location: 788252-789661 bp Ori: ASP54374.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788606-789293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788606-789293 bp Feature: gene Location: 789658-789945 bp Feature: gene Location: 789888-791093 bp Ori: ASP54376.1 Feature: domain Description: PRK07574 Location: 789897-791046 bp Feature: domain Description: PRK07574 Location: 789897-791046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), Transposase_mut (pfam00872), RVT-GII, PRK07574 (NAD-dependent formate dehydrogenase)