myRT

myRT report for GCA_002197045.1_ASM219704v1

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Seq: CP021808.1 Sinorhizobium meliloti strain Rm41 chromosome, complete genome (3678504 bp)
Overview 1 RT 1: 1331733-1335000 bp Neighborhood of RT #1 [1331733, 1335000] RVT-CRISPR-like Feature: gene Location: 1331733-1332032 bp Feature: gene Location: 1332046-1332357 bp Feature: gene Location: 1332692-1333987 bp Ori: ASP77714.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1333058-1333640 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 333058-1 333640 bp Feature: gene Location: 1334182-1334400 bp Feature: gene Location: 1334491-1335000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: CP021811.1 Sinorhizobium meliloti strain Rm41 plasmid accessoryA, complete sequence (247065 bp)
Overview 1 RT 1: 99559-107188 bp Neighborhood of RT #1 [99559, 107226] HATPase_c_3 RVT-UG5 SH3_3 YegI Feature: gene Location: 99559-99798 bp Feature: gene Location: 99764-101215 bp Ori: ASP83041.1 Feature: domain Description: HATPase_c_3 Location: 99839-100163 bp Feature: domain Description: HATPase_c_3 Location: 99839-100163 bp Feature: gene Location: 101543-104560 bp Ori: ASP83042.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 102038-102509 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 102 038-102 509 bp Feature: gene Location: 104644-105306 bp Ori: ASP83043.1 Feature: domain Description: SH3_3 Location: 105136-105289 bp Feature: domain Description: SH3_3 Location: 105136-1052 89 bp Feature: gene Location: 105310-107226 bp Ori: ASP83044.1 Feature: domain Description: YegI Location: 105331-107188 bp Feature: domain Description: YegI Location: 105331-107188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, SH3_3 (pfam08239), YegI (COG4248)

Seq: CP021810.1 Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence (1665079 bp)
Overview 1 RT 1: 239232-244208 bp 2 RT 2: 251209-253942 bp 3 RT 3: 1121241-1124100 bp 4 RT 4: 1593565-1599549 bp Neighborhood of RT #1 [239232, 244208] Beta_helix RVT-GII Neighborhood of RT #2 [251209, 254036] DDE_3 RVT-GII GIIM COG3415 Neighborhood of RT #3 [1121241, 1124189] RVT-GII GIIM MazF Neighborhood of RT #4 [1593565, 1599560] AraJ RVT-GII PRK09356 hutH Feature: gene Location: 239232-240503 bp Ori: ASP81635.1 Feature: domain Description: Beta_helix Location: 239301-239421 bp Feature: domain Description: Beta_helix Location: 23 93 01-23 9421 bp Feature: gene Location: 240846-241062 bp Feature: gene Location: 241159-242568 bp Ori: ASP81636.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241513-242200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241513 -242200 bp Feature: gene Location: 243029-243481 bp Feature: gene Location: 243553-244208 bp Feature: gene Location: 251209-251697 bp Feature: domain Description: DDE_3 Location: 251215-251611 bp Feature: domain Description: DDE_3 Location: 251215-251611 bp Feature: gene Location: 251617-251883 bp Feature: gene Location: 251778-253037 bp Ori: ASP81641.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251994-252648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251994-252648 bp Feature: domain Description: GIIM Note: maturase Location: 252729-252951 bp Feature: domain Description: GIIM Note: maturase Location: 252729-252951 bp Feature: gene Location: 253170-253489 bp Feature: gene Location: 253582-254036 bp Feature: domain Description: COG3415 Location: 253588-253942 bp Feature: domain Description: COG3 415 Location: 253 588-253 942 bp Feature: gene Location: 1121241-1121543 bp Feature: gene Location: 1121863-1122488 bp Feature: gene Location: 1122483-1123682 bp Ori: ASP82381.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122648-1123263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122648-1123 263 bp Feature: domain Description: GIIM Note: maturase Location: 1123317-1123533 bp Feature: domain Description: GIIM Note: maturase Location: 1123 3 17-1123 53 3 bp Feature: gene Location: 1123635-1123986 bp Feature: gene Location: 1123986-1124189 bp Ori: ASP82382.1 Feature: domain Description: MazF Location: 1123989-1124100 bp Feature: domain Description: MazF Location: 1123 989-1124100 bp Feature: gene Location: 1593565-1594749 bp Ori: ASP82783.1 Feature: domain Description: AraJ Location: 1593568-1594726 bp Feature: domain Description: AraJ Location: 1593 568-1594726 bp Feature: gene Location: 1594788-1595383 bp Feature: gene Location: 1595399-1596578 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595543-1595813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595543 -1595813 bp Feature: gene Location: 1596781-1598028 bp Ori: ASP82784.1 Feature: domain Description: PRK09356 Location: 1596817-1598020 bp Feature: domain Description: PRK093 56 Location: 1596817-1598020 bp Feature: gene Location: 1598025-1599560 bp Ori: ASP82785.1 Gene: hutH Feature: domain Description: hutH Location: 1598034-1599549 bp Feature: domain Description: hutH Location: 159803 4-1599549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta_helix (pfam13229), RVT-GII, DDE_3 (pfam13358), GIIM (pfam08388), COG3415 (Transposase ), MazF (COG2337), AraJ (COG2814), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225)

Seq: CP021809.1 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence (1549593 bp)
Overview 1 RT 1: 1286617-1292714 bp Neighborhood of RT #1 [1286617, 1292749] NorD RVT-GII GIIM PRK13347 LabA Feature: gene Location: 1286617-1288512 bp Ori: ASP81123.1 Feature: domain Description: NorD Location: 1286620-1288507 bp Feature: domain Description: NorD Location: 1286620-1288507 bp Feature: gene Location: 1288509-1289115 bp Feature: gene Location: 1289131-1290310 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1289275-1289890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1289275-1289890 bp Feature: domain Description: GIIM Note: maturase Location: 1289944-1290160 bp Feature: domain Description: GIIM Note: maturase Location: 128994 4 -1290160 bp Feature: gene Location: 1290416-1291768 bp Ori: ASP81124.1 Gene: hemN Feature: domain Description: PRK13347 Location: 1290434-1291763 bp Feature: domain Description: PRK1334 7 Location: 12904 34 -1291763 bp Feature: gene Location: 1292216-1292749 bp Ori: ASP81125.1 Feature: domain Description: LabA Location: 1292303-1292714 bp Feature: domain Description: LabA Location: 1292303-1292714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NorD (COG4548), RVT-GII, GIIM (pfam08388), PRK13347 (coproporphyrinogen III oxidase; Provisional), LabA (COG1432)