myRT

myRT report for GCA_002197065.1_ASM219706v1

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Seq: CP021799.1 Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence (1680729 bp)
Overview 1 RT 1: 742110-744851 bp 2 RT 2: 976882-982931 bp 3 RT 3: 1466619-1469552 bp 4 RT 4: 1637998-1641839 bp Neighborhood of RT #1 [742110, 744937] COG3415 RVT-GII GIIM DDE_3 Neighborhood of RT #2 [976882, 983047] hutH PRK09356 RVT-GII GIIM AraJ HTH_ARSR Neighborhood of RT #3 [1466619, 1469552] MazF MazF RVT-GII GIIM Neighborhood of RT #4 [1637998, 1641888] COG3547 COG3335 RVT-GII GIIM COG3415 Feature: gene Location: 742110-742564 bp Feature: domain Description: COG3415 Location: 742116-742470 bp Feature: domain Description: COG341 5 Location: 7421 1 6-742470 bp Feature: gene Location: 742657-742976 bp Feature: gene Location: 743109-744368 bp Ori: ASP62192.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743325-743979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743325-743979 bp Feature: domain Description: GIIM Note: maturase Location: 744060-744282 bp Feature: domain Description: GIIM Note: maturase Location: 744060-744282 bp Feature: gene Location: 744263-744529 bp Feature: gene Location: 744449-744937 bp Feature: domain Description: DDE_3 Location: 744455-744851 bp Feature: domain Description: DDE_3 Location: 744455-744851 bp Feature: gene Location: 976882-978417 bp Ori: ASP62379.1 Gene: hutH Feature: domain Description: hutH Location: 976891-978406 bp Feature: domain Description: hutH Location: 976891 -978406 bp Feature: gene Location: 978414-979661 bp Ori: ASP62380.1 Feature: domain Description: PRK09356 Location: 978450-979653 bp Feature: domain Description: PRK09356 Location: 978450-979653 bp Feature: gene Location: 979864-981225 bp Ori: ASP62381.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980191-980806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9801 91 -980806 bp Feature: domain Description: GIIM Note: maturase Location: 980863-981076 bp Feature: domain Description: GIIM Note: maturase Location: 980863-981 076 bp Feature: gene Location: 981402-982586 bp Ori: ASP62382.1 Feature: domain Description: AraJ Location: 981405-982563 bp Feature: domain Description: AraJ Location: 981 405-982563 bp Feature: gene Location: 982676-983047 bp Ori: ASP62383.1 Feature: domain Description: HTH_ARSR Location: 982733-982931 bp Feature: domain Description: HTH_ARSR Location: 982733-982931 bp Feature: gene Location: 1466619-1466822 bp Ori: ASP62817.1 Feature: domain Description: MazF Location: 1466622-1466733 bp Feature: domain Description: MazF Location: 1 466622-1 466733 bp Feature: gene Location: 1466822-1467169 bp Ori: ASP62818.1 Feature: domain Description: MazF Location: 1466825-1467158 bp Feature: domain Description: MazF Location: 1 466825-1 4671 58 bp Feature: gene Location: 1467122-1468321 bp Ori: ASP62819.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1467287-1467902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 467287-1 467902 bp Feature: domain Description: GIIM Note: maturase Location: 1467959-1468172 bp Feature: domain Description: GIIM Note: maturase Location: 1 467959-1 4681 72 bp Feature: gene Location: 1468316-1468933 bp Feature: gene Location: 1469250-1469552 bp Feature: gene Location: 1637998-1638963 bp Ori: ASP62976.1 Feature: domain Description: COG3547 Location: 1638022-1638955 bp Feature: domain Description: COG3547 Location: 1 638022-1 638955 bp Feature: gene Location: 1639058-1639546 bp Feature: domain Description: COG3335 Location: 1639151-1639535 bp Feature: domain Description: COG3335 Location: 1 6391 51 -1 639535 bp Feature: gene Location: 1639627-1640886 bp Ori: ASP62977.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639843-1640497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 639843-1 640497 bp Feature: domain Description: GIIM Note: maturase Location: 1640578-1640800 bp Feature: domain Description: GIIM Note: maturase Location: 1 640578-1 640800 bp Feature: gene Location: 1641019-1641338 bp Feature: gene Location: 1641434-1641888 bp Feature: domain Description: COG3415 Location: 1641437-1641839 bp Feature: domain Description: COG341 5 Location: 1 641 437-1 641 839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), hutH (TIGR01225), PRK09356 (imidazolonepropionase; Validated), AraJ (COG2814), HTH_ARSR (smart00418), MazF (COG2337), COG3547 (Transposase )
COG3335 (Transposase )

Seq: CP021798.1 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence (1363628 bp)
Overview 1 RT 1: 709644-713119 bp 2 RT 2: 1013563-1017838 bp Neighborhood of RT #1 [709644, 713168] COG3335 RVT-GII GIIM COG3415 Neighborhood of RT #2 [1013563, 1018181] SoxE IS285 RVT-GII GIIM INT_RitA_C_like Feature: gene Location: 709644-709856 bp Feature: gene Location: 710338-710826 bp Feature: domain Description: COG3335 Location: 710431-710815 bp Feature: domain Description: COG3335 Location: 710431-710815 bp Feature: gene Location: 710907-712166 bp Ori: ASP60890.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711123-711777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71112 3-711777 bp Feature: domain Description: GIIM Note: maturase Location: 711858-712080 bp Feature: domain Description: GIIM Note: maturase Location: 711858-712 080 bp Feature: gene Location: 712299-712618 bp Feature: gene Location: 712714-713168 bp Feature: domain Description: COG3415 Location: 712717-713119 bp Feature: domain Description: COG3415 Location: 712 717-713119 bp Feature: gene Location: 1013563-1014156 bp Ori: ASP61149.1 Feature: domain Description: SoxE Location: 1013755-1014091 bp Feature: domain Description: SoxE Location: 1013755-1014091 bp Feature: gene Location: 1014423-1014890 bp Feature: domain Description: IS285 Location: 1014768-1014891 bp Feature: domain Description: IS2 85 Location: 1014768-1014891 bp Feature: gene Location: 1015503-1017020 bp Ori: ASP61150.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1015806-1016568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1015806-1016568 bp Feature: domain Description: GIIM Note: maturase Location: 1016637-1016907 bp Feature: domain Description: GIIM Note: maturase Location: 1016637-1016907 bp Feature: gene Location: 1017111-1017346 bp Feature: gene Location: 1017631-1018181 bp Feature: domain Description: INT_RitA_C_like Location: 1017640-1017838 bp Feature: domain Description: INT_RitA_C_like Location: 1017640-1017838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3335 (Transposase ), RVT-GII, GIIM (pfam08388), COG3415 (Transposase ), SoxE (pfam06525), IS285 (COG3328), INT_RitA_C_like (cd01188)