myRT

myRT report for GCA_002197085.1_ASM219708v1

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Seq: CP021813.1 Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence (1454983 bp)
Overview 1 RT 1: 715719-720506 bp 2 RT 2: 728012-731422 bp 3 RT 3: 793741-800170 bp Neighborhood of RT #1 [715719, 720520] TnpB_IS66 InsE RVT-GII PBP2_Ehub_like PRK07475 Neighborhood of RT #2 [728012, 731433] PRK00942 RVT-GII COG3547 GIIM Neighborhood of RT #3 [793741, 800358] TnpB_IS66 InsE RVT-GII YkfC RVT-GII group_II_RT_mat Transposase_mut RutF Feature: gene Location: 715719-716072 bp Ori: ASP87141.1 Feature: domain Description: TnpB_IS66 Location: 715746-716034 bp Feature: domain Description: TnpB_IS66 Location: 71 5746-71 6034 bp Feature: gene Location: 716053-716511 bp Ori: ASP87142.1 Feature: domain Description: InsE Location: 716098-716272 bp Feature: domain Description: InsE Location: 71 6098-71 6272 bp Feature: gene Location: 716624-718446 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 717362-717959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 7362-71 7959 bp Feature: gene Location: 718621-719511 bp Ori: ASP87143.1 Gene: ehuB Feature: domain Description: PBP2_Ehub_like Location: 718723-719446 bp Feature: domain Description: PBP2_Ehub_like Location: 71 8723-71 9446 bp Feature: gene Location: 719780-720520 bp Ori: ASP87144.1 Feature: domain Description: PRK07475 Location: 719918-720506 bp Feature: domain Description: PRK07475 Location: 71 991 8-720506 bp Feature: gene Location: 728012-728224 bp Feature: domain Description: PRK00942 Location: 728027-728225 bp Feature: domain Description: PRK00942 Location: 728027-728225 bp Feature: gene Location: 728345-728517 bp Feature: gene Location: 728854-729715 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729019-729214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72901 9-72921 4 bp Feature: gene Location: 730016-731183 bp Feature: domain Description: COG3547 Location: 730121-730346 bp Feature: domain Description: COG3547 Location: 7301 21 -730346 bp Feature: gene Location: 731212-731433 bp Ori: ASP87149.1 Feature: domain Description: GIIM Note: maturase Location: 731275-731422 bp Feature: domain Description: GIIM Note: maturase Location: 731 275-731 422 bp Feature: gene Location: 793741-794094 bp Ori: ASP87184.1 Feature: domain Description: TnpB_IS66 Location: 793768-794056 bp Feature: domain Description: TnpB_IS66 Location: 793768-794056 bp Feature: gene Location: 794075-794533 bp Ori: ASP87185.1 Feature: domain Description: InsE Location: 794120-794294 bp Feature: domain Description: InsE Location: 7941 20-794294 bp Feature: gene Location: 794646-796469 bp Ori: ASP87186.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795384-796074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795384-796074 bp Feature: gene Location: 796689-798194 bp Gene: ltrA Feature: domain Description: YkfC Location: 796692-797037 bp Feature: domain Description: YkfC Location: 796692-797037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797241-797478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797241 -797478 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 797871-798006 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 797871 -798006 bp Feature: gene Location: 798280-798994 bp Feature: domain Description: Transposase_mut Location: 798283-798769 bp Feature: domain Description: Transposase_mut Location: 798283-798769 bp Feature: gene Location: 799687-800358 bp Ori: ASP87187.1 Feature: domain Description: RutF Location: 799711-800170 bp Feature: domain Description: RutF Location: 79971 1 -8001 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), InsE (COG2963), RVT-GII, PBP2_Ehub_like (cd01002), PRK07475 (hypothetical protein; Provisional), PRK00942 (acetylglutamate kinase; Provisional), COG3547 (Transposase ), GIIM (pfam08388), YkfC (COG3344), group_II_RT_mat (TIGR04416)
Transposase_mut (pfam00872), RutF (TIGR03615)

Seq: CP021817.1 Sinorhizobium meliloti strain M270 plasmid accessoryC, complete sequence (127177 bp)
Overview 1 RT 1: 43756-47044 bp Neighborhood of RT #1 [43756, 47055] Transposase_mut RVT-GII rve_2 ParD Feature: gene Location: 43756-44454 bp Feature: domain Description: Transposase_mut Location: 43765-44455 bp Feature: domain Description: Transposase_mut Location: 43765-44455 bp Feature: gene Location: 44512-44751 bp Feature: gene Location: 45003-46413 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45357-45846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45357-45846 bp Feature: gene Location: 46509-46685 bp Feature: domain Description: rve_2 Location: 46521-46635 bp Feature: domain Description: rve_2 Location: 4652 1-46635 bp Feature: gene Location: 46780-47055 bp Ori: ASP89674.1 Feature: domain Description: ParD Location: 46792-47044 bp Feature: domain Description: ParD Location: 46792 -47044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII, rve_2 (pfam13333), ParD (pfam09386)

Seq: CP021816.1 Sinorhizobium meliloti strain M270 plasmid accessoryB, complete sequence (203845 bp)
Overview 1 RT 1: 39916-43263 bp 2 RT 2: 108624-115260 bp Neighborhood of RT #1 [39916, 43268] HU_IHF RVT-GII GIIM COG5489 Neighborhood of RT #2 [108624, 115262] COG3547 COG5659 RVT-GII Sigma70_r4_2 COG3547 COG3547 Feature: gene Location: 39916-40169 bp Feature: gene Location: 40307-40585 bp Ori: ASP89557.1 Feature: domain Description: HU_IHF Location: 40322-40571 bp Feature: domain Description: HU_IHF Location: 403 22-40571 bp Feature: gene Location: 41163-42524 bp Ori: ASP89558.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41490-42105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41490-42105 bp Feature: domain Description: GIIM Note: maturase Location: 42159-42375 bp Feature: domain Description: GIIM Note: maturase Location: 42159-423 75 bp Feature: gene Location: 42578-42907 bp Feature: gene Location: 42951-43268 bp Ori: ASP89559.1 Feature: domain Description: COG5489 Location: 42954-43263 bp Feature: domain Description: COG5489 Location: 42954-43 263 bp Feature: gene Location: 108624-109804 bp Feature: domain Description: COG3547 Location: 108741-109482 bp Feature: domain Description: COG3 547 Location: 108741-109482 bp Feature: gene Location: 109887-110306 bp Feature: domain Description: COG5659 Location: 109911-110307 bp Feature: domain Description: COG5659 Location: 109911-1103 07 bp Feature: gene Location: 110791-112200 bp Ori: ASP89598.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111145-111832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111145-11183 2 bp Feature: gene Location: 112296-113142 bp Feature: domain Description: Sigma70_r4_2 Location: 112311-112419 bp Feature: domain Description: Sigma70_r4_2 Location: 1123 11-112419 bp Feature: gene Location: 114486-115262 bp Feature: domain Description: COG3547 Location: 114501-114720 bp Feature: domain Description: COG3 547 Location: 114501-114720 bp Feature: domain Description: COG3547 Location: 114900-115260 bp Feature: domain Description: COG3 547 Location: 114900-115260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU_IHF (cl00257), RVT-GII, GIIM (pfam08388), COG5489 (Uncharacterized conserved protein, DUF736 family ), COG3547 (Transposase ), COG5659 (SRSO17 transposase ), Sigma70_r4_2 (pfam08281)

Seq: CP021814.1 Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence (1694441 bp)
Overview 1 RT 1: 214588-217441 bp 2 RT 2: 728000-734153 bp Neighborhood of RT #1 [214588, 217530] RVT-GII GIIM MazF MazF Neighborhood of RT #2 [728000, 734164] HTH_ARSR AraJ RVT-GII PRK09356 hutH Feature: gene Location: 214588-214890 bp Feature: gene Location: 215207-215834 bp Feature: gene Location: 215840-217027 bp Ori: ASP87974.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215993-216608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215993-216608 bp Feature: domain Description: GIIM Note: maturase Location: 216662-216878 bp Feature: domain Description: GIIM Note: maturase Location: 216662-216878 bp Feature: gene Location: 216980-217327 bp Ori: ASP87975.1 Feature: domain Description: MazF Location: 216983-217316 bp Feature: domain Description: MazF Location: 216983-217316 bp Feature: gene Location: 217327-217530 bp Ori: ASP87976.1 Feature: domain Description: MazF Location: 217330-217441 bp Feature: domain Description: MazF Location: 217330-2174 4 1 bp Feature: gene Location: 728000-728371 bp Ori: ASP88423.1 Feature: domain Description: HTH_ARSR Location: 728057-728255 bp Feature: domain Description: HTH_ARSR Location: 728057-728255 bp Feature: gene Location: 728461-729645 bp Ori: ASP88424.1 Feature: domain Description: AraJ Location: 728464-729622 bp Feature: domain Description: AraJ Location: 7284 64 -729622 bp Feature: gene Location: 729822-731182 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730149-730371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73014 9-730371 bp Feature: gene Location: 731385-732632 bp Ori: ASP88425.1 Feature: domain Description: PRK09356 Location: 731421-732624 bp Feature: domain Description: PRK09356 Location: 7314 21-732624 bp Feature: gene Location: 732629-734164 bp Ori: ASP88426.1 Gene: hutH Feature: domain Description: hutH Location: 732638-734153 bp Feature: domain Description: hutH Location: 732638-734 153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MazF (COG2337), HTH_ARSR (smart00418), AraJ (COG2814), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225)

Seq: CP021815.1 Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence (297123 bp)
Overview 1 RT 1: 122400-125457 bp 2 RT 2: 135479-137822 bp Neighborhood of RT #1 [122400, 126436] RVT-GII GIIM TraG_VirD4 Neighborhood of RT #2 [135479, 138072] COG3415 RVT-GII DDE_3 Feature: gene Location: 122400-122711 bp Feature: gene Location: 122779-122973 bp Feature: gene Location: 122926-124287 bp Ori: ASP89397.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123253-123868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12325 3-123868 bp Feature: domain Description: GIIM Note: maturase Location: 123922-124138 bp Feature: domain Description: GIIM Note: maturase Location: 123922-124138 bp Feature: gene Location: 124341-124670 bp Feature: gene Location: 124857-126436 bp Feature: domain Description: TraG_VirD4 Location: 125229-125457 bp Feature: domain Description: TraG_VirD4 Location: 125 229-125 45 7 bp Feature: gene Location: 135479-135661 bp Feature: domain Description: COG3415 Location: 135497-135653 bp Feature: domain Description: COG3415 Location: 135 497-135 65 3 bp Feature: gene Location: 135825-136144 bp Feature: gene Location: 136277-137531 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136493-136637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136493-136637 bp Feature: gene Location: 137426-137692 bp Feature: gene Location: 137612-138072 bp Feature: domain Description: DDE_3 Location: 137618-137822 bp Feature: domain Description: DDE_3 Location: 137618-137822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TraG_VirD4, COG3415 (Transposase ), DDE_3 (pfam13358)