myRT

myRT report for GCA_002197125.1_ASM219712v1

Download annotations/find similar RTs

Seq: CP021821.1 Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence (416269 bp)
Overview 1 RT 1: 343274-348498 bp Neighborhood of RT #1 [343274, 349012] TnpB_IS66 recomb_XerD RVT-GII DUF772 DDE_Tnp_1 Transposase_mut Transposase_mut Feature: gene Location: 343274-343579 bp Ori: ASP95899.1 Feature: domain Description: TnpB_IS66 Location: 343373-343475 bp Feature: domain Description: TnpB_IS66 Location: 343373-343475 bp Feature: gene Location: 343520-344415 bp Feature: domain Description: recomb_XerD Location: 343664-343955 bp Feature: domain Description: recomb_XerD Location: 343664-343955 bp Feature: gene Location: 344666-346075 bp Ori: ASP95900.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345020-345707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345020-345707 bp Feature: gene Location: 346535-348157 bp Ori: ASP95964.1 Feature: domain Description: DUF772 Location: 346655-346874 bp Feature: domain Description: DUF772 Location: 346655-346874 bp Feature: domain Description: DDE_Tnp_1 Location: 347093-347348 bp Feature: domain Description: DDE_Tnp_1 Location: 347093-347348 bp Feature: domain Description: Transposase_mut Location: 347702-348071 bp Feature: domain Description: Transposase_mut Location: 347702-348071 bp Feature: gene Location: 348264-349012 bp Feature: domain Description: Transposase_mut Location: 348273-348498 bp Feature: domain Description: Transposase_mut Location: 348273-348498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), recomb_XerD (TIGR02225), RVT-GII, DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), Transposase_mut (pfam00872)

Seq: CP021820.1 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence (1681904 bp)
Overview 1 RT 1: 679107-681960 bp 2 RT 2: 1158607-1164759 bp 3 RT 3: 1524358-1527529 bp Neighborhood of RT #1 [679107, 682049] RVT-GII GIIM MazF MazF Neighborhood of RT #2 [1158607, 1164770] HTH_ARSR AraJ RVT-GII PRK09356 hutH Neighborhood of RT #3 [1524358, 1527567] RVT-GII InsE TnpB_IS66 Feature: gene Location: 679107-679409 bp Feature: gene Location: 679803-680131 bp Feature: gene Location: 680185-681546 bp Ori: ASP94679.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680512-681127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680512 -68112 7 bp Feature: domain Description: GIIM Note: maturase Location: 681181-681397 bp Feature: domain Description: GIIM Note: maturase Location: 681181-681397 bp Feature: gene Location: 681499-681846 bp Ori: ASP94680.1 Feature: domain Description: MazF Location: 681502-681835 bp Feature: domain Description: MazF Location: 681502 -681835 bp Feature: gene Location: 681846-682049 bp Ori: ASP94681.1 Feature: domain Description: MazF Location: 681849-681960 bp Feature: domain Description: MazF Location: 681849-681960 bp Feature: gene Location: 1158607-1158978 bp Ori: ASP95095.1 Feature: domain Description: HTH_ARSR Location: 1158664-1158862 bp Feature: domain Description: HTH_ARSR Location: 1158664-1158862 bp Feature: gene Location: 1159068-1160252 bp Ori: ASP95096.1 Feature: domain Description: AraJ Location: 1159071-1160229 bp Feature: domain Description: AraJ Location: 1159071-11602 2 9 bp Feature: gene Location: 1160429-1161789 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160756-1160978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160756-1160978 bp Feature: gene Location: 1161991-1163238 bp Ori: ASP95097.1 Feature: domain Description: PRK09356 Location: 1162027-1163230 bp Feature: domain Description: PRK09356 Location: 1162 02 7-11632 30 bp Feature: gene Location: 1163235-1164770 bp Ori: ASP95098.1 Gene: hutH Feature: domain Description: hutH Location: 1163244-1164759 bp Feature: domain Description: hutH Location: 11632 44-1164759 bp Feature: gene Location: 1524358-1524552 bp Feature: gene Location: 1524594-1524808 bp Feature: gene Location: 1524839-1526662 bp Ori: ASP95387.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1525577-1526267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 5577-152 62 67 bp Feature: gene Location: 1526775-1527233 bp Ori: ASP95388.1 Feature: domain Description: InsE Location: 1526820-1526994 bp Feature: domain Description: InsE Location: 152 682 0-152 6994 bp Feature: gene Location: 1527214-1527567 bp Ori: ASP95389.1 Feature: domain Description: TnpB_IS66 Location: 1527241-1527529 bp Feature: domain Description: TnpB_IS66 Location: 152 72 41-152 752 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MazF (COG2337), HTH_ARSR (smart00418), AraJ (COG2814), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225), InsE (COG2963), TnpB_IS66 (pfam05717)