myRT

myRT report for GCA_002197165.1_ASM219716v1

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Seq: CP021832.1 Sinorhizobium meliloti strain HM006 plasmid accessoryA, complete sequence (220189 bp)
Overview 1 RT 1: 48439-51556 bp 2 RT 2: 87475-90565 bp Neighborhood of RT #1 [48439, 51729] COG3415 RVT-GII GIIM COG3335 HTH_XRE Neighborhood of RT #2 [87475, 90565] COG3415 RVT-GII GIIM DDE_3 Feature: gene Location: 48439-48893 bp Feature: domain Description: COG3415 Location: 48442-48844 bp Feature: domain Description: COG341 5 Location: 48442-48844 bp Feature: gene Location: 48989-49308 bp Feature: gene Location: 49441-50700 bp Ori: ASQ14994.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49657-50311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49657-5031 1 bp Feature: domain Description: GIIM Note: maturase Location: 50392-50614 bp Feature: domain Description: GIIM Note: maturase Location: 50392-5061 4 bp Feature: gene Location: 50781-51269 bp Feature: domain Description: COG3335 Location: 50874-51258 bp Feature: domain Description: COG3335 Location: 50874-51 258 bp Feature: gene Location: 51241-51729 bp Ori: ASQ14995.1 Feature: domain Description: HTH_XRE Location: 51394-51556 bp Feature: domain Description: HTH_XRE Location: 51 394-51 556 bp Feature: gene Location: 87475-87929 bp Feature: domain Description: COG3415 Location: 87478-87880 bp Feature: domain Description: COG341 5 Location: 87478-87880 bp Feature: gene Location: 88025-88344 bp Feature: gene Location: 88477-89736 bp Ori: ASQ15022.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88693-89347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88693-89347 bp Feature: domain Description: GIIM Note: maturase Location: 89428-89650 bp Feature: domain Description: GIIM Note: maturase Location: 89428-89650 bp Feature: gene Location: 89817-90304 bp Feature: domain Description: DDE_3 Location: 89829-90138 bp Feature: domain Description: DDE_3 Location: 89829-901 38 bp Feature: gene Location: 90398-90565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), COG3335 (Transposase ), HTH_XRE (smart00530), DDE_3 (pfam13358)

Seq: CP021831.1 Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence (1628141 bp)
Overview 1 RT 1: 583025-585965 bp 2 RT 2: 1065876-1072025 bp Neighborhood of RT #1 [583025, 585965] RVT-GII MazF Neighborhood of RT #2 [1065876, 1072036] HTH_ARSR AraJ RVT-GII PRK09356 hutH Feature: gene Location: 583025-583327 bp Feature: gene Location: 583724-584053 bp Feature: gene Location: 584107-585463 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584434-584656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584434-584656 bp Feature: gene Location: 585416-585763 bp Ori: ASQ13986.1 Feature: domain Description: MazF Location: 585419-585752 bp Feature: domain Description: MazF Location: 585419-585752 bp Feature: gene Location: 585763-585965 bp Feature: gene Location: 1065876-1066247 bp Ori: ASQ14398.1 Feature: domain Description: HTH_ARSR Location: 1065933-1066131 bp Feature: domain Description: HTH_ARSR Location: 1065933-1066131 bp Feature: gene Location: 1066337-1067521 bp Ori: ASQ14399.1 Feature: domain Description: AraJ Location: 1066340-1067498 bp Feature: domain Description: AraJ Location: 1066340-1067498 bp Feature: gene Location: 1067698-1069054 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068025-1068247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106802 5-10682 47 bp Feature: gene Location: 1069257-1070504 bp Ori: ASQ14400.1 Feature: domain Description: PRK09356 Location: 1069293-1070496 bp Feature: domain Description: PRK09356 Location: 10692 93-1070496 bp Feature: gene Location: 1070501-1072036 bp Ori: ASQ14401.1 Gene: hutH Feature: domain Description: hutH Location: 1070510-1072025 bp Feature: domain Description: hutH Location: 1070510-1072 02 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MazF (COG2337), HTH_ARSR (smart00418), AraJ (COG2814), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225)

Seq: CP021830.1 Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence (1484605 bp)
Overview 1 RT 1: 586205-589443 bp 2 RT 2: 612172-615545 bp 3 RT 3: 661359-666732 bp 4 RT 4: 931811-936799 bp 5 RT 5: 1179935-1184516 bp Neighborhood of RT #1 [586205, 589442] RVT-GII Transposase_mut Transposase_mut Neighborhood of RT #2 [612172, 615594] Terminase_6 COG3335 RVT-GII GIIM COG3415 Neighborhood of RT #3 [661359, 666732] COG3335 RVT-GII GIIM COG3415 RVT-GII Neighborhood of RT #4 [931811, 936848] TMADH_HD_FMN FixC Pyr_redox DDE_3 RVT-GII GIIM COG3415 Neighborhood of RT #5 [1179935, 1184516] COG3415 RVT-GII GIIM COG3335 Feature: gene Location: 586205-586405 bp Feature: gene Location: 586356-586529 bp Feature: gene Location: 586756-588165 bp Ori: ASQ12652.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587110-587797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587110-587797 bp Feature: gene Location: 588417-588656 bp Feature: gene Location: 588714-589442 bp Feature: domain Description: Transposase_mut Location: 588723-589125 bp Feature: domain Description: Transposase_mut Location: 588723 -589125 bp Feature: domain Description: Transposase_mut Location: 589257-589443 bp Feature: domain Description: Transposase_mut Location: 589257-589443 bp Feature: gene Location: 612172-612445 bp Feature: domain Description: Terminase_6 Location: 612178-612343 bp Feature: domain Description: Terminase_6 Location: 612178-6123 43 bp Feature: gene Location: 612766-613254 bp Feature: domain Description: COG3335 Location: 612859-613243 bp Feature: domain Description: COG3 3 3 5 Location: 612859-613 243 bp Feature: gene Location: 613335-614594 bp Ori: ASQ12667.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613551-614205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613 551-614205 bp Feature: domain Description: GIIM Note: maturase Location: 614286-614508 bp Feature: domain Description: GIIM Note: maturase Location: 614286-614508 bp Feature: gene Location: 614727-615044 bp Feature: gene Location: 615140-615594 bp Feature: domain Description: COG3415 Location: 615143-615545 bp Feature: domain Description: COG3 415 Location: 615143 -615545 bp Feature: gene Location: 661359-661775 bp Feature: gene Location: 662195-662683 bp Feature: domain Description: COG3335 Location: 662288-662672 bp Feature: domain Description: COG3 3 3 5 Location: 662288-662672 bp Feature: gene Location: 662764-663873 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662830-663484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66283 0-663 484 bp Feature: domain Description: GIIM Note: maturase Location: 663565-663787 bp Feature: domain Description: GIIM Note: maturase Location: 663 565-663 787 bp Feature: gene Location: 664280-664734 bp Feature: domain Description: COG3415 Location: 664283-664685 bp Feature: domain Description: COG3 415 Location: 664283 -664685 bp Feature: gene Location: 664830-665149 bp Feature: gene Location: 665282-666202 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665498-666152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665498-666152 bp Feature: gene Location: 666227-666439 bp Feature: gene Location: 666553-666732 bp Feature: gene Location: 931811-933904 bp Ori: ASQ12899.1 Feature: domain Description: TMADH_HD_FMN Location: 931820-932924 bp Feature: domain Description: TMADH_HD_FMN Location: 93 1820-93 2924 bp Feature: domain Description: FixC Location: 932984-933095 bp Feature: domain Description: FixC Location: 93 2984-93 3 095 bp Feature: domain Description: Pyr_redox Location: 933413-933578 bp Feature: domain Description: Pyr_redox Location: 93 3 413 -93 3 578 bp Feature: gene Location: 934019-934506 bp Feature: domain Description: DDE_3 Location: 934031-934340 bp Feature: domain Description: DDE_3 Location: 93 403 1-93 43 40 bp Feature: gene Location: 934587-935846 bp Ori: ASQ12900.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934803-935457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 4803 -93 5457 bp Feature: domain Description: GIIM Note: maturase Location: 935538-935760 bp Feature: domain Description: GIIM Note: maturase Location: 93 553 8-93 5760 bp Feature: gene Location: 935979-936298 bp Feature: gene Location: 936394-936848 bp Feature: domain Description: COG3415 Location: 936397-936799 bp Feature: domain Description: COG3 415 Location: 93 63 97-93 6799 bp Feature: gene Location: 1179935-1180389 bp Feature: domain Description: COG3415 Location: 1179938-1180340 bp Feature: domain Description: COG3 415 Location: 117993 8-11803 40 bp Feature: gene Location: 1180485-1180804 bp Feature: gene Location: 1180937-1182196 bp Ori: ASQ13118.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1181153-1181807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1181153 -1181807 bp Feature: domain Description: GIIM Note: maturase Location: 1181888-1182110 bp Feature: domain Description: GIIM Note: maturase Location: 1181888-1182110 bp Feature: gene Location: 1182277-1182765 bp Feature: domain Description: COG3335 Location: 1182370-1182754 bp Feature: domain Description: COG3 3 3 5 Location: 11823 70-1182754 bp Feature: gene Location: 1182884-1184516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Transposase_mut (pfam00872), Terminase_6 (pfam03237), COG3335 (Transposase ), GIIM (pfam08388), COG3415 (Transposase ), TMADH_HD_FMN (cd02929), FixC (COG0644), Pyr_redox (pfam00070), DDE_3 (pfam13358)

Seq: CP021829.1 Sinorhizobium meliloti strain HM006 chromosome, complete genome (3664783 bp)
Overview 1 RT 1: 1910607-1913563 bp 2 RT 2: 3254336-3258496 bp Neighborhood of RT #1 [1910607, 1913563] COG3415 RVT-GII GIIM COG3335 Neighborhood of RT #2 [3254336, 3258648] PBP1_ABC_sugar_binding_like_4 PBP1_uncharacterized_sugar_binding RVT-GII GIIM HTH_LacI Feature: gene Location: 1910607-1911061 bp Feature: domain Description: COG3415 Location: 1910610-1911012 bp Feature: domain Description: COG34 15 Location: 1910610-1911012 bp Feature: gene Location: 1911157-1911476 bp Feature: gene Location: 1911609-1912868 bp Ori: ASQ10336.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1911825-1912479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1911825-19124 79 bp Feature: domain Description: GIIM Note: maturase Location: 1912560-1912782 bp Feature: domain Description: GIIM Note: maturase Location: 1912560-1912782 bp Feature: gene Location: 1912949-1913437 bp Feature: domain Description: COG3335 Location: 1913042-1913426 bp Feature: domain Description: COG3335 Location: 191304 2-19134 26 bp Feature: gene Location: 1913489-1913563 bp Feature: gene Location: 3254336-3255370 bp Ori: ASQ11551.1 Feature: domain Description: PBP1_ABC_sugar_binding_like_4 Location: 3254486-3255320 bp Feature: domain Description: PBP1_ABC_sugar_binding_like_4 Location: 3254 4 86-3255320 bp Feature: gene Location: 3255772-3256464 bp Feature: domain Description: PBP1_uncharacterized_sugar_binding Location: 3255793-3256453 bp Feature: domain Description: PBP1_uncharacterized_sugar_binding Location: 3255793-32564 53 bp Feature: gene Location: 3256545-3257804 bp Ori: ASQ11552.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256761-3257415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256761-32574 15 bp Feature: domain Description: GIIM Note: maturase Location: 3257496-3257718 bp Feature: domain Description: GIIM Note: maturase Location: 32574 96-3257718 bp Feature: gene Location: 3257937-3258256 bp Feature: gene Location: 3258352-3258648 bp Feature: domain Description: HTH_LacI Location: 3258373-3258496 bp Feature: domain Description: HTH_LacI Location: 3258373-32584 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), COG3335 (Transposase ), PBP1_ABC_sugar_binding_like_4, PBP1_uncharacterized_sugar_binding, HTH_LacI (cd01392)