myRT

myRT report for GCA_002201795.1_ASM220179v1

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Seq: CP021904.1 Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome (4775573 bp)
Overview 1 RT 1: 3843482-3849242 bp 2 RT 2: 3875112-3894150 bp 3 RT 3: 3909366-3916511 bp 4 RT 4: 3946723-3953957 bp 5 RT 5: 3998202-4021658 bp Neighborhood of RT #1 [3843482, 3849265] HTH_XRE HigB_toxin RVT_N RVT-GII GIIM COG3177 COG3177 Neighborhood of RT #2 [3875112, 3894200] Arm-DNA-bind_5 Dcm Dcm MvaI_BcnI RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM KOG1803 KOG1803 PLDc_yjhR_C_like PLDc_yjhR_C_like COG4584 IstB_IS21 RVT_N RVT-GII GIIM PemK_toxin MazE Neighborhood of RT #3 [3909366, 3916511] COG2865 DUF4177 RVT_N RVT-GII GIIM Neighborhood of RT #4 [3946723, 3953957] TonB_C RVT_N RVT-GII GIIM Neighborhood of RT #5 [3998202, 4021705] YcjD RVT_N RVT-GII GIIM YeeA Eco57I TaqI_C RVT_N RVT-GII GIIM DUF2326 RVT_N RVT-GII GIIM DUF262 DUF262 DUF1524 Feature: gene Location: 3843482-3844033 bp Ori: ASB50284.1 Feature: domain Description: HTH_XRE Location: 3843767-3843926 bp Feature: domain Description: HTH_XRE Location: 3843767-3843926 bp Feature: gene Location: 3844045-3844386 bp Ori: ASB50285.1 Feature: domain Description: HigB_toxin Location: 3844117-3844324 bp Feature: domain Description: HigB_toxin Location: 38441 1 7-3844324 bp Feature: gene Location: 3844517-3846046 bp Ori: ASB50286.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3844529-3844754 bp Feature: domain Description: RVT_N Location: 3844529-3844754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3844805-3845432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3844805-3845432 bp Feature: domain Description: GIIM Note: maturase Location: 3845489-3845723 bp Feature: domain Description: GIIM Note: maturase Location: 3845489-3845723 bp Feature: gene Location: 3846900-3847940 bp Ori: ASB50287.1 Feature: domain Description: COG3177 Location: 3847023-3847923 bp Feature: domain Description: COG31 77 Location: 3847023-3847923 bp Feature: gene Location: 3848153-3849265 bp Ori: ASB50288.1 Feature: domain Description: COG3177 Location: 3848162-3849242 bp Feature: domain Description: COG31 77 Location: 38481 62-3849242 bp Feature: gene Location: 3875112-3877319 bp Ori: ASB50311.1 Feature: domain Description: Arm-DNA-bind_5 Location: 3875142-3875352 bp Feature: domain Description: Arm-DNA-bind_5 Location: 38751 42-3875352 bp Feature: domain Description: Dcm Location: 3875463-3875919 bp Feature: domain Description: Dcm Location: 3875463-387591 9 bp Feature: domain Description: Dcm Location: 3876507-3877317 bp Feature: domain Description: Dcm Location: 3876507-387731 7 bp Feature: gene Location: 3877316-3878494 bp Ori: ASB50312.1 Feature: domain Description: MvaI_BcnI Location: 3877805-3878465 bp Feature: domain Description: MvaI_BcnI Location: 3877805-3878465 bp Feature: gene Location: 3879476-3881005 bp Ori: ASB50313.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3879488-3879713 bp Feature: domain Description: RVT_N Location: 3879488-387971 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3879764-3880391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3879764-3880391 bp Feature: domain Description: GIIM Note: maturase Location: 3880448-3880682 bp Feature: domain Description: GIIM Note: maturase Location: 3880448-3880682 bp Feature: gene Location: 3881096-3881527 bp Feature: gene Location: 3881797-3882279 bp Feature: gene Location: 3883107-3884636 bp Ori: ASB50316.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3883119-3883344 bp Feature: domain Description: RVT_N Location: 38831 1 9-3883344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3883395-3884022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3883395-3884022 bp Feature: domain Description: GIIM Note: maturase Location: 3884079-3884313 bp Feature: domain Description: GIIM Note: maturase Location: 3884079-388431 3 bp Feature: gene Location: 3884929-3888423 bp Ori: ASB50317.1 Feature: domain Description: KOG1803 Location: 3885643-3885913 bp Feature: domain Description: KOG1 803 Location: 3885643-388591 3 bp Feature: domain Description: KOG1803 Location: 3886960-3887854 bp Feature: domain Description: KOG1 803 Location: 3886960-3887854 bp Feature: domain Description: PLDc_yjhR_C_like Location: 3887926-3888019 bp Feature: domain Description: PLDc_yjhR_C_like Location: 3887926-388801 9 bp Feature: domain Description: PLDc_yjhR_C_like Location: 3888061-3888409 bp Feature: domain Description: PLDc_yjhR_C_like Location: 3888061 -3888409 bp Feature: gene Location: 3889260-3890813 bp Ori: ASB50318.1 Feature: domain Description: COG4584 Location: 3889356-3890163 bp Feature: domain Description: COG4584 Location: 3889356-38901 63 bp Feature: gene Location: 3890830-3891549 bp Ori: ASB50319.1 Feature: domain Description: IstB_IS21 Location: 3890986-3891511 bp Feature: domain Description: IstB_IS21 Location: 3890986-3891 51 1 bp Feature: gene Location: 3891607-3892782 bp Ori: ASB50320.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3891619-3891844 bp Feature: domain Description: RVT_N Location: 3891 61 9-3891 844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3891895-3892522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3891 895-3892522 bp Feature: domain Description: GIIM Note: maturase Location: 3892579-3892747 bp Feature: domain Description: GIIM Note: maturase Location: 3892579-3892747 bp Feature: gene Location: 3893641-3893964 bp Ori: ASB50321.1 Feature: domain Description: PemK_toxin Location: 3893653-3893953 bp Feature: domain Description: PemK_toxin Location: 3893653-3893953 bp Feature: gene Location: 3893955-3894200 bp Ori: ASB50322.1 Feature: domain Description: MazE Location: 3893958-3894150 bp Feature: domain Description: MazE Location: 3893958-38941 50 bp Feature: gene Location: 3909366-3910712 bp Ori: ASB50337.1 Feature: domain Description: COG2865 Location: 3909375-3910671 bp Feature: domain Description: COG2865 Location: 3909375-391 0671 bp Feature: gene Location: 3911707-3911925 bp Ori: ASB50338.1 Feature: domain Description: DUF4177 Location: 3911716-3911851 bp Feature: domain Description: DUF41 77 Location: 391 1 71 6-391 1 851 bp Feature: gene Location: 3912316-3913845 bp Ori: ASB50339.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3912328-3912553 bp Feature: domain Description: RVT_N Location: 391 2328-391 2553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3912604-3913231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 2604-391 3231 bp Feature: domain Description: GIIM Note: maturase Location: 3913288-3913522 bp Feature: domain Description: GIIM Note: maturase Location: 391 3288-391 3522 bp Feature: gene Location: 3914697-3915518 bp Feature: gene Location: 3915897-3916511 bp Feature: gene Location: 3946723-3946965 bp Feature: gene Location: 3947274-3948773 bp Ori: ASB50365.1 Feature: domain Description: TonB_C Location: 3948054-3948285 bp Feature: domain Description: TonB_C Location: 3948054-3948285 bp Feature: gene Location: 3949027-3950556 bp Ori: ASB50366.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3949039-3949264 bp Feature: domain Description: RVT_N Location: 3949039-3949264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3949315-3949942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394931 5-3949942 bp Feature: domain Description: GIIM Note: maturase Location: 3949999-3950233 bp Feature: domain Description: GIIM Note: maturase Location: 3949999-3950233 bp Feature: gene Location: 3951531-3953111 bp Feature: gene Location: 3953415-3953957 bp Feature: gene Location: 3998202-3998540 bp Feature: gene Location: 3998547-3999140 bp Ori: ASB50399.1 Feature: domain Description: YcjD Location: 3998724-3998871 bp Feature: domain Description: YcjD Location: 3998724-3998871 bp Feature: gene Location: 3999231-4000760 bp Ori: ASB50400.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3999243-3999468 bp Feature: domain Description: RVT_N Location: 3999243-3999468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3999519-4000146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399951 9-40001 46 bp Feature: domain Description: GIIM Note: maturase Location: 4000203-4000437 bp Feature: domain Description: GIIM Note: maturase Location: 4000203-4000437 bp Feature: gene Location: 4001745-4002710 bp Feature: gene Location: 4002717-4006259 bp Ori: ASB50402.1 Feature: domain Description: YeeA Location: 4004103-4004781 bp Feature: domain Description: YeeA Location: 40041 03-4004781 bp Feature: domain Description: Eco57I Location: 4005204-4005519 bp Feature: domain Description: Eco57I Location: 4005204-400551 9 bp Feature: domain Description: TaqI_C Location: 4005744-4006095 bp Feature: domain Description: TaqI_C Location: 4005744-4006095 bp Feature: gene Location: 4006307-4006534 bp Feature: gene Location: 4008371-4009900 bp Ori: ASB50404.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4008383-4008608 bp Feature: domain Description: RVT_N Location: 4008383-4008608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4008659-4009286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4008659-4009286 bp Feature: domain Description: GIIM Note: maturase Location: 4009343-4009577 bp Feature: domain Description: GIIM Note: maturase Location: 4009343-4009577 bp Feature: gene Location: 4010753-4012450 bp Ori: ASB50405.1 Feature: domain Description: DUF2326 Location: 4012082-4012445 bp Feature: domain Description: DUF2326 Location: 401 2082-401 2445 bp Feature: gene Location: 4012441-4012674 bp Feature: gene Location: 4014468-4014968 bp Feature: gene Location: 4015006-4015251 bp Feature: gene Location: 4015379-4016908 bp Ori: ASB50411.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4015391-4015616 bp Feature: domain Description: RVT_N Location: 401 5391 -401 561 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4015667-4016294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 5667-401 6294 bp Feature: domain Description: GIIM Note: maturase Location: 4016351-4016585 bp Feature: domain Description: GIIM Note: maturase Location: 401 6351 -401 6585 bp Feature: gene Location: 4017763-4019922 bp Ori: ASB50412.1 Feature: domain Description: DUF262 Location: 4017802-4018573 bp Feature: domain Description: DUF262 Location: 401 7802-401 8573 bp Feature: gene Location: 4019915-4021705 bp Ori: ASB50413.1 Feature: domain Description: DUF262 Location: 4019975-4020572 bp Feature: domain Description: DUF262 Location: 401 9975-4020572 bp Feature: domain Description: DUF1524 Location: 4021172-4021658 bp Feature: domain Description: DUF1 524 Location: 4021 1 72-4021 658 bp 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Associated domains:myRT HTH_XRE (smart00530), HigB_toxin (pfam09907), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3177 (Fic family protein ), Arm-DNA-bind_5 (pfam17293), Dcm (COG0270), MvaI_BcnI (pfam15515), KOG1803 (KOG1803, DNA helicase )
PLDc_yjhR_C_like (cd09118), COG4584 (Transposase ), IstB_IS21 (pfam01695), PemK_toxin (pfam02452), MazE (COG2336), COG2865 (Predicted transcriptional regulator, contains HTH domain ), DUF4177 (pfam13783), TonB_C (pfam03544), YcjD (COG2852), YeeA (COG1002)
Eco57I (pfam07669), TaqI_C (pfam12950), DUF2326 (pfam10088), DUF262 (pfam03235), DUF1524 (pfam07510)