myRT

myRT report for GCA_002201835.1_ASM220183v1

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Seq: CP021879.1 Escherichia coli strain AR_0137 chromosome, complete genome (4746578 bp)
Overview 1 RT 1: 610890-614052 bp 2 RT 2: 624669-630194 bp 3 RT 3: 764350-768651 bp 4 RT 4: 1998343-2003075 bp 5 RT 5: 3263783-3272466 bp Neighborhood of RT #1 [610890, 614052] COG2085 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [624669, 630301] InsE Arm-DNA-bind_3 RVT-Retrons PRK09678 Neighborhood of RT #3 [764350, 768651] EFP_modif_epmB PHA02517 RVT-GII GIIM Neighborhood of RT #4 [1998343, 2003083] RVT-GII GIIM PHA02517 LldP Neighborhood of RT #5 [3263783, 3272466] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII GIIM Feature: gene Location: 610890-611303 bp Ori: ASB77576.1 Feature: domain Description: COG2085 Location: 610989-611136 bp Feature: domain Description: COG2085 Location: 61 0989-61 1 1 36 bp Feature: gene Location: 611230-611717 bp Feature: domain Description: PHA02517 Location: 611233-611404 bp Feature: domain Description: PHA0251 7 Location: 61 1 233-61 1 404 bp Feature: gene Location: 611798-613321 bp Ori: ASB77577.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612071-612803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 2071 -61 2803 bp Feature: domain Description: GIIM Note: maturase Location: 612878-613076 bp Feature: domain Description: GIIM Note: maturase Location: 61 2878-61 3076 bp Feature: gene Location: 613275-613700 bp Feature: gene Location: 613615-614052 bp Feature: gene Location: 624669-625882 bp Feature: domain Description: InsE Location: 624672-625011 bp Feature: domain Description: InsE Location: 624672-62501 1 bp Feature: gene Location: 626113-627026 bp Feature: domain Description: Arm-DNA-bind_3 Location: 626122-626374 bp Feature: domain Description: Arm-DNA-bind_3 Location: 6261 22-626374 bp Feature: gene Location: 627481-628413 bp Ori: ASB77588.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 627583-628177 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 627583-6281 77 bp Feature: gene Location: 628415-629383 bp Feature: gene Location: 630029-630301 bp Ori: ASB77590.1 Feature: domain Description: PRK09678 Location: 630038-630194 bp Feature: domain Description: PRK09678 Location: 630038-6301 94 bp Feature: gene Location: 764350-765378 bp Ori: ASB77721.1 Feature: domain Description: EFP_modif_epmB Location: 764395-765355 bp Feature: domain Description: EFP_modif_epmB Location: 764395-765355 bp Feature: gene Location: 765900-766379 bp Feature: domain Description: PHA02517 Location: 765903-766377 bp Feature: domain Description: PHA0251 7 Location: 765903-766377 bp Feature: gene Location: 766463-767986 bp Ori: ASB77722.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766736-767468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766736-767468 bp Feature: domain Description: GIIM Note: maturase Location: 767543-767741 bp Feature: domain Description: GIIM Note: maturase Location: 767543-767741 bp Feature: gene Location: 767940-768365 bp Feature: gene Location: 768280-768651 bp Feature: gene Location: 1998343-1998714 bp Feature: gene Location: 1998629-1999054 bp Feature: gene Location: 1999008-2000531 bp Ori: ASB78845.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1999281-2000013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 999281 -200001 3 bp Feature: domain Description: GIIM Note: maturase Location: 2000088-2000286 bp Feature: domain Description: GIIM Note: maturase Location: 2000088-2000286 bp Feature: gene Location: 2000612-2001100 bp Feature: domain Description: PHA02517 Location: 2000615-2001089 bp Feature: domain Description: PHA0251 7 Location: 200061 5-2001 089 bp Feature: gene Location: 2001530-2003083 bp Ori: ASB78846.1 Feature: domain Description: LldP Location: 2001542-2003075 bp Feature: domain Description: LldP Location: 2001 542-2003075 bp Feature: gene Location: 3263783-3269518 bp Ori: ASB79968.1 Feature: domain Description: DUF4011 Location: 3263873-3264707 bp Feature: domain Description: DUF401 1 Location: 3263873-3264707 bp Feature: domain Description: DEXXQc_SF1 Location: 3265064-3268166 bp Feature: domain Description: DEXXQc_SF1 Location: 3265064-32681 66 bp Feature: domain Description: SF1_C_Upf1 Location: 3268175-3268703 bp Feature: domain Description: SF1 _C_Upf1 Location: 32681 75-3268703 bp Feature: domain Description: MTES_1575 Location: 3268832-3269123 bp Feature: domain Description: MTES_1 575 Location: 3268832-32691 23 bp Feature: gene Location: 3269739-3270197 bp Feature: domain Description: PHA02517 Location: 3269742-3270189 bp Feature: domain Description: PHA0251 7 Location: 3269742-32701 89 bp Feature: gene Location: 3270278-3271801 bp Ori: ASB79969.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270551-3271283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270551 -3271 283 bp Feature: domain Description: GIIM Note: maturase Location: 3271358-3271556 bp Feature: domain Description: GIIM Note: maturase Location: 3271 358-3271 556 bp Feature: gene Location: 3271755-3272180 bp Feature: gene Location: 3272095-3272466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), EFP_modif_epmB (TIGR03821), LldP (COG1620)
DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)

Seq: CP021881.1 Escherichia coli strain AR_0137 plasmid tig00001145_pilon, complete sequence (101165 bp)
Overview 1 RT 1: 51654-55129 bp Neighborhood of RT #1 [51654, 55146] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 51654-51962 bp Feature: domain Description: Rep_3 Location: 51660-51924 bp Feature: domain Description: Rep_3 Location: 51660-5192 4 bp Feature: gene Location: 51972-52669 bp Feature: domain Description: Zn_Tnp_IS1 Location: 51978-52080 bp Feature: domain Description: Zn_Tnp_IS1 Location: 51978-52 080 bp Feature: domain Description: HTH_Tnp_IS1 Location: 52101-52233 bp Feature: domain Description: HTH_Tnp_IS1 Location: 52 101-52 2 33 bp Feature: gene Location: 52821-54305 bp Ori: ASB81741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53223-53913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532 2 3-53913 bp Feature: gene Location: 54305-54556 bp Feature: gene Location: 54715-55146 bp Ori: ASB81743.1 Feature: domain Description: PRK10276 Location: 54766-55129 bp Feature: domain Description: PRK102 76 Location: 54766-5512 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)