myRT

myRT report for GCA_002205375.1_ASM220537v1

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Seq: CP022002.1 Pseudomonas aeruginosa strain Pa1242 chromosome, complete genome (7050510 bp)
Overview 1 RT 1: 633745-644311 bp 2 RT 2: 660568-668746 bp 3 RT 3: 4763414-4772111 bp 4 RT 4: 4784713-4789901 bp 5 RT 5: 6319928-6326924 bp Neighborhood of RT #1 [633745, 644313] HTH_Tnp_1 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [660568, 668746] PRK10770 LptD RVT_N RVT-GII Neighborhood of RT #3 [4763414, 4772146] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P SLC-NCS1sbd_CobB-like Neighborhood of RT #4 [4784713, 4789960] GstA IS5 RVT-GII GIIM DUF772 COG3547 Neighborhood of RT #5 [6319928, 6326983] CHD CHD RVT-GII GIIM DUF772 COG3547 Feature: gene Location: 633745-634621 bp Feature: domain Description: HTH_Tnp_1 Location: 633754-633850 bp Feature: domain Description: HTH_Tnp_1 Location: 633754-633850 bp Feature: gene Location: 634686-635550 bp Feature: gene Location: 635851-637536 bp Ori: ASD14945.1 Gene: ltrA Feature: domain Description: RVT_N Location: 635908-636148 bp Feature: domain Description: RVT_N Location: 635908-6361 48 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 636196-636832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6361 96-636832 bp Feature: domain Description: GIIM Note: maturase Location: 636886-637117 bp Feature: domain Description: GIIM Note: maturase Location: 636886-6371 1 7 bp Feature: domain Description: HNH Note: nucleases Location: 637369-637507 bp Feature: domain Description: HNH Note: nucleases Location: 637369-637507 bp Feature: gene Location: 638616-642353 bp Ori: ASD14946.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 638724-639381 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 638724-639381 bp Feature: domain Description: PRK09776 Location: 639594-640065 bp Feature: domain Description: PRK09776 Location: 639594-640065 bp Feature: domain Description: PAS Location: 640137-640647 bp Feature: domain Description: PAS Location: 6401 37-640647 bp Feature: domain Description: PRK10060 Location: 640656-642303 bp Feature: domain Description: PRK1 0060 Location: 640656-642303 bp Feature: gene Location: 642460-644313 bp Ori: ASD14947.1 Feature: domain Description: PRK05658 Location: 642472-644311 bp Feature: domain Description: PRK05658 Location: 642472-64431 1 bp Feature: gene Location: 660568-661860 bp Ori: ASD14964.1 Feature: domain Description: PRK10770 Location: 660658-661852 bp Feature: domain Description: PRK1 0770 Location: 660658-661 852 bp Feature: gene Location: 661841-664615 bp Ori: ASD14965.1 Feature: domain Description: LptD Location: 662036-664601 bp Feature: domain Description: LptD Location: 662036-664601 bp Feature: gene Location: 664747-666458 bp Gene: ltrA Feature: domain Description: RVT_N Location: 664804-665047 bp Feature: domain Description: RVT_N Location: 664804-665047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665092-665458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665092-665458 bp Feature: gene Location: 666646-666858 bp Feature: gene Location: 667731-668746 bp Feature: gene Location: 4763414-4765504 bp Ori: ASD18478.1 Feature: domain Description: HyuA Location: 4763429-4765484 bp Feature: domain Description: HyuA Location: 4763429-4765484 bp Feature: gene Location: 4765540-4767285 bp Ori: ASD18479.1 Feature: domain Description: Hydantoinase_B Location: 4765555-4767139 bp Feature: domain Description: Hydantoinase_B Location: 4765555-47671 39 bp Feature: gene Location: 4767586-4768959 bp Ori: ASD18480.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4767943-4768558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4767943-4768558 bp Feature: domain Description: GIIM Note: maturase Location: 4768612-4768840 bp Feature: domain Description: GIIM Note: maturase Location: 476861 2-4768840 bp Feature: gene Location: 4769459-4770631 bp Ori: ASD20624.1 Feature: domain Description: Porin_O_P Location: 4769678-4770515 bp Feature: domain Description: Porin_O_P Location: 4769678-477051 5 bp Feature: gene Location: 4770785-4772146 bp Ori: ASD18481.1 Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 4770842-4772111 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 4770842-47721 1 1 bp Feature: gene Location: 4784713-4785333 bp Ori: ASD18493.1 Feature: domain Description: GstA Location: 4784716-4785292 bp Feature: domain Description: GstA Location: 478471 6-4785292 bp Feature: gene Location: 4785913-4786383 bp Feature: domain Description: IS5 Location: 4785919-4786351 bp Feature: domain Description: IS5 Location: 478591 9-4786351 bp Feature: gene Location: 4786443-4787711 bp Ori: ASD18494.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4786656-4787313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4786656-478731 3 bp Feature: domain Description: GIIM Note: maturase Location: 4787391-4787613 bp Feature: domain Description: GIIM Note: maturase Location: 4787391 -478761 3 bp Feature: gene Location: 4788231-4788741 bp Feature: domain Description: DUF772 Location: 4788381-4788576 bp Feature: domain Description: DUF772 Location: 4788381 -4788576 bp Feature: gene Location: 4788935-4789960 bp Ori: ASD18495.1 Feature: domain Description: COG3547 Location: 4788950-4789901 bp Feature: domain Description: COG3547 Location: 4788950-4789901 bp Feature: gene Location: 6319928-6321472 bp Ori: ASD19838.1 Feature: domain Description: CHD Location: 6320144-6320558 bp Feature: domain Description: CHD Location: 63201 44-6320558 bp Feature: domain Description: CHD Location: 6320786-6321275 bp Feature: domain Description: CHD Location: 6320786-6321 275 bp Feature: gene Location: 6322991-6323317 bp Feature: gene Location: 6323467-6324735 bp Ori: ASD19839.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6323680-6324337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6323680-6324337 bp Feature: domain Description: GIIM Note: maturase Location: 6324415-6324637 bp Feature: domain Description: GIIM Note: maturase Location: 632441 5-6324637 bp Feature: gene Location: 6325255-6325765 bp Feature: domain Description: DUF772 Location: 6325405-6325600 bp Feature: domain Description: DUF772 Location: 6325405-6325600 bp Feature: gene Location: 6325958-6326983 bp Ori: ASD19840.1 Feature: domain Description: COG3547 Location: 6325973-6326924 bp Feature: domain Description: COG3547 Location: 6325973-6326924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), HyuA (COG0145), Hydantoinase_B (pfam02538), Porin_O_P (pfam07396), SLC-NCS1sbd_CobB-like (cd11484), GstA (COG0625), IS5 (COG3039), DUF772 (pfam05598), COG3547 (Transposase )
CHD (cd07302)