myRT

myRT report for GCA_002208195.1_ASM220819v1

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Seq: CP022016.1 Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence (473456 bp)
Overview 1 RT 1: 256986-264904 bp Neighborhood of RT #1 [256986, 264904] ESPR Haemagg_act FhaC RVT-GII IS285 Feature: gene Location: 256986-261296 bp Ori: ASD90260.1 Feature: domain Description: ESPR Location: 256989-257055 bp Feature: domain Description: ESPR Location: 256989-257055 bp Feature: domain Description: Haemagg_act Location: 257202-257532 bp Feature: domain Description: Haemagg_act Location: 257202-257532 bp Feature: gene Location: 261471-263246 bp Ori: ASD90261.1 Feature: domain Description: FhaC Location: 261537-263190 bp Feature: domain Description: FhaC Location: 261 537-2631 90 bp Feature: gene Location: 263462-264215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263465-263801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263465-263801 bp Feature: gene Location: 264230-264459 bp Feature: domain Description: IS285 Location: 264236-264377 bp Feature: domain Description: IS285 Location: 264236-264377 bp Feature: gene Location: 264710-264904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Haemagg_act (smart00912), FhaC (COG2831), RVT-GII, IS285 (COG3328)

Seq: CP022015.1 Salmonella enterica subsp. enterica serovar India str. SA20085604 chromosome, complete genome (5395280 bp)
Overview 1 RT 1: 760635-767434 bp 2 RT 2: 3865313-3869113 bp 3 RT 3: 4655818-4663103 bp Neighborhood of RT #1 [760635, 767454] EcoRII-C HpaR RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT_N RVT-GII PRK15203 Neighborhood of RT #2 [3865313, 3869115] RVT-UG4 SCPU FimA Neighborhood of RT #3 [4655818, 4663129] COG3905 DUF4942 RVT_N RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM HNH DUF957 Feature: gene Location: 760635-760820 bp Ori: ASD85469.1 Feature: domain Description: EcoRII-C Location: 760638-760818 bp Feature: domain Description: EcoRII-C Location: 760638-760818 bp Feature: gene Location: 761005-761304 bp Ori: ASD85470.1 Feature: domain Description: HpaR Location: 761008-761218 bp Feature: domain Description: HpaR Location: 761008-7612 18 bp Feature: gene Location: 761268-761687 bp Ori: ASD85471.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761271-761520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7612 71-76152 0 bp Feature: gene Location: 761808-762812 bp Ori: ASD85472.1 Feature: domain Description: Phage_int_SAM_1 Location: 761856-762096 bp Feature: domain Description: Phage_int_SAM_1 Location: 761856-762 096 bp Feature: domain Description: INT_RitC_C_like Location: 762183-762732 bp Feature: domain Description: INT_RitC_C_like Location: 762 183-762 732 bp Feature: gene Location: 762802-763779 bp Ori: ASD85473.1 Feature: domain Description: INT_RitB_C_like Location: 763135-763717 bp Feature: domain Description: INT_RitB_C_like Location: 763135-763717 bp Feature: gene Location: 763779-764756 bp Ori: ASD89750.1 Feature: domain Description: Phage_int_SAM_1 Location: 763878-764103 bp Feature: domain Description: Phage_int_SAM_1 Location: 763878-764103 bp Feature: domain Description: INT_RitA_C_like Location: 764187-764724 bp Feature: domain Description: INT_RitA_C_like Location: 764187-76472 4 bp Feature: gene Location: 765172-765879 bp Ori: ASD85474.1 Feature: domain Description: RVT_N Location: 765220-765463 bp Feature: domain Description: RVT_N Location: 7652 2 0-765463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765508-765874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765508-765874 bp Feature: gene Location: 765905-766087 bp Feature: gene Location: 766822-767454 bp Ori: ASD85475.1 Feature: domain Description: PRK15203 Location: 766825-767434 bp Feature: domain Description: PRK152 03 Location: 76682 5-767434 bp Feature: gene Location: 3865313-3865681 bp Feature: gene Location: 3865858-3866625 bp Feature: gene Location: 3866612-3867616 bp Ori: ASD88364.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3866966-3867401 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3866966-3867401 bp Feature: gene Location: 3867685-3868320 bp Ori: ASD88365.1 Feature: domain Description: SCPU Location: 3867823-3868120 bp Feature: domain Description: SCPU Location: 386782 3-386812 0 bp Feature: gene Location: 3868333-3869115 bp Ori: ASD88366.1 Feature: domain Description: FimA Location: 3868555-3869113 bp Feature: domain Description: FimA Location: 3868555-3869113 bp Feature: gene Location: 4655818-4656066 bp Ori: ASD89942.1 Feature: domain Description: COG3905 Location: 4655842-4656037 bp Feature: domain Description: COG3905 Location: 4655842 -4656037 bp Feature: gene Location: 4656143-4656673 bp Feature: domain Description: DUF4942 Location: 4656146-4656653 bp Feature: domain Description: DUF4942 Location: 4656146-4656653 bp Feature: gene Location: 4657296-4658006 bp Feature: domain Description: RVT_N Location: 4657350-4657593 bp Feature: domain Description: RVT_N Location: 4657350-4657593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4657638-4658004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4657638-4658004 bp Feature: gene Location: 4658120-4659124 bp Ori: ASD89059.1 Feature: domain Description: Phage_int_SAM_1 Location: 4658168-4658408 bp Feature: domain Description: Phage_int_SAM_1 Location: 4658168-4658408 bp Feature: domain Description: INT_RitC_C_like Location: 4658495-4659044 bp Feature: domain Description: INT_RitC_C_like Location: 4658495-4659044 bp Feature: gene Location: 4659114-4660091 bp Ori: ASD89060.1 Feature: domain Description: INT_RitB_C_like Location: 4659447-4660029 bp Feature: domain Description: INT_RitB_C_like Location: 4659447-466002 9 bp Feature: gene Location: 4660091-4661068 bp Ori: ASD89943.1 Feature: domain Description: Phage_int_SAM_1 Location: 4660190-4660415 bp Feature: domain Description: Phage_int_SAM_1 Location: 4660190-4660415 bp Feature: domain Description: INT_RitA_C_like Location: 4660499-4661036 bp Feature: domain Description: INT_RitA_C_like Location: 4660499-4661036 bp Feature: gene Location: 4661470-4662477 bp Ori: ASD89061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4661473-4661755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4661473-4661755 bp Feature: domain Description: GIIM Note: maturase Location: 4661809-4662040 bp Feature: domain Description: GIIM Note: maturase Location: 4661809-4662 040 bp Feature: domain Description: HNH Note: nucleases Location: 4662298-4662433 bp Feature: domain Description: HNH Note: nucleases Location: 4662 2 98-4662 433 bp Feature: gene Location: 4662556-4662873 bp Feature: gene Location: 4662935-4663129 bp Ori: ASD89062.1 Feature: domain Description: DUF957 Location: 4662944-4663103 bp Feature: domain Description: DUF957 Location: 4662 944-4663103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EcoRII-C (pfam09019), HpaR (TIGR02337), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), RVT_N (pfam13655), PRK15203 (4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional), RVT-UG4
SCPU (smart00972), FimA (pfam16970), COG3905 (Predicted transcriptional regulator ), DUF4942 (pfam13708), GIIM (pfam08388), HNH (pfam01844), DUF957