myRT

myRT report for GCA_002209105.2_ASM220910v2

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Seq: CP022086.2 Escherichia coli O104:H4 strain FDAARGOS_348 chromosome, complete genome (5256950 bp)
Overview 1 RT 1: 3032563-3040010 bp 2 RT 2: 4457014-4462984 bp 3 RT 3: 4480918-4484417 bp 4 RT 4: 4679329-4682968 bp Neighborhood of RT #1 [3032563, 3040012] PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Neighborhood of RT #2 [4457014, 4464779] InsE RVT-GII GIIM PHA02517 Peptidase_S6 Neighborhood of RT #3 [4480918, 4484817] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [4679329, 4683135] InsE RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 3032563-3032988 bp Feature: domain Description: PHA02517 Location: 3032653-3032989 bp Feature: domain Description: PHA0251 7 Location: 3032653-3032989 bp Feature: gene Location: 3032921-3033352 bp Feature: gene Location: 3033646-3035169 bp Ori: ASF03757.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3033919-3034651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303391 9-3034651 bp Feature: domain Description: GIIM Note: maturase Location: 3034726-3034924 bp Feature: domain Description: GIIM Note: maturase Location: 3034726-3034924 bp Feature: gene Location: 3035259-3035732 bp Feature: domain Description: PHA02517 Location: 3035265-3035730 bp Feature: domain Description: PHA0251 7 Location: 3035265-3035730 bp Feature: gene Location: 3035897-3040012 bp Feature: domain Description: Peptidase_S6 Location: 3036050-3037475 bp Feature: domain Description: Peptidase_S6 Location: 3036050-3037475 bp Feature: domain Description: autotrans_barl Location: 3038783-3040010 bp Feature: domain Description: autotrans_barl Location: 3038783-304001 0 bp Feature: gene Location: 4457014-4457753 bp Feature: domain Description: InsE Location: 4457017-4457353 bp Feature: domain Description: InsE Location: 445701 7-4457353 bp Feature: gene Location: 4457746-4458117 bp Feature: gene Location: 4458411-4459934 bp Ori: ASF05048.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4458684-4459416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4458684-445941 6 bp Feature: domain Description: GIIM Note: maturase Location: 4459491-4459689 bp Feature: domain Description: GIIM Note: maturase Location: 4459491 -4459689 bp Feature: gene Location: 4460024-4460497 bp Feature: domain Description: PHA02517 Location: 4460030-4460495 bp Feature: domain Description: PHA0251 7 Location: 4460030-4460495 bp Feature: gene Location: 4460662-4464779 bp Feature: domain Description: Peptidase_S6 Location: 4460815-4462984 bp Feature: domain Description: Peptidase_S6 Location: 446081 5-4462984 bp Feature: gene Location: 4480918-4481131 bp Feature: gene Location: 4481334-4481807 bp Feature: domain Description: PHA02517 Location: 4481340-4481805 bp Feature: domain Description: PHA0251 7 Location: 4481 340-4481 805 bp Feature: gene Location: 4481897-4483420 bp Ori: ASF05059.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4482170-4482902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44821 70-4482902 bp Feature: domain Description: GIIM Note: maturase Location: 4482977-4483175 bp Feature: domain Description: GIIM Note: maturase Location: 4482977-44831 75 bp Feature: gene Location: 4483714-4484085 bp Feature: gene Location: 4484078-4484817 bp Feature: domain Description: InsE Location: 4484081-4484417 bp Feature: domain Description: InsE Location: 4484081 -448441 7 bp Feature: gene Location: 4679329-4680046 bp Feature: domain Description: InsE Location: 4679368-4679617 bp Feature: domain Description: InsE Location: 4679368-467961 7 bp Feature: gene Location: 4679973-4680410 bp Feature: gene Location: 4680704-4682227 bp Ori: ASF05244.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680977-4681709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680977-4681 709 bp Feature: domain Description: GIIM Note: maturase Location: 4681784-4681982 bp Feature: domain Description: GIIM Note: maturase Location: 4681 784-4681 982 bp Feature: gene Location: 4682308-4682795 bp Feature: domain Description: PHA02517 Location: 4682311-4682482 bp Feature: domain Description: PHA0251 7 Location: 468231 1 -4682482 bp Feature: gene Location: 4682722-4683135 bp Ori: ASF05245.1 Feature: domain Description: COG2085 Location: 4682821-4682968 bp Feature: domain Description: COG2085 Location: 4682821 -4682968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), InsE (COG2963), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: CP022087.2 Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed2, complete sequence (75559 bp)
Overview 1 RT 1: 30410-34029 bp Neighborhood of RT #1 [30410, 34034] PHA02517 RVT-GII GIIM YkfC Feature: gene Location: 30410-30634 bp Feature: gene Location: 30600-31073 bp Feature: domain Description: PHA02517 Location: 30606-31071 bp Feature: domain Description: PHA02 517 Location: 30606-31071 bp Feature: gene Location: 31163-32545 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31295-32027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 95-32 02 7 bp Feature: domain Description: GIIM Note: maturase Location: 32102-32300 bp Feature: domain Description: GIIM Note: maturase Location: 32 102 -32 300 bp Feature: gene Location: 32602-33712 bp Feature: gene Location: 33879-34034 bp Ori: ASF05970.1 Feature: domain Description: YkfC Location: 33888-34029 bp Feature: domain Description: YkfC Location: 33888-3402 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), YkfC (COG3344)