myRT

myRT report for GCA_002209245.2_ASM220924v2

Download annotations/find similar RTs

Seq: CP022089.2 Shewanella sp. FDAARGOS_354 chromosome, complete genome (5031863 bp)
Overview 1 RT 1: 1870881-1881003 bp 2 RT 2: 3242652-3252056 bp 3 RT 3: 4416104-4421452 bp Neighborhood of RT #1 [1870881, 1881003] integrase_gron PRK13746 RVT-GII GIIM RVT-GII GIIM DAP2 DAP2 DAP2 Neighborhood of RT #2 [3242652, 3252067] RVT-UG1 nitrilase_Rim1_like PRK09737 HsdM Neighborhood of RT #3 [4416104, 4421460] IbaG MurA RVT-GII GIIM PRK13746 Feature: gene Location: 1870881-1871840 bp Ori: ASF15017.1 Feature: domain Description: integrase_gron Location: 1870902-1871838 bp Feature: domain Description: integrase_gron Location: 1 870902-1 871 838 bp Feature: gene Location: 1872147-1872938 bp Ori: ASF17604.1 Feature: domain Description: PRK13746 Location: 1872150-1872930 bp Feature: domain Description: PRK1 3746 Location: 1 8721 50-1 872930 bp Feature: gene Location: 1873027-1874376 bp Ori: ASF15018.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873309-1873927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 873309-1 873927 bp Feature: domain Description: GIIM Note: maturase Location: 1873975-1874179 bp Feature: domain Description: GIIM Note: maturase Location: 1 873975-1 8741 79 bp Feature: gene Location: 1874990-1875340 bp Feature: gene Location: 1875435-1876784 bp Ori: ASF15020.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1875717-1876335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 87571 7-1 876335 bp Feature: domain Description: GIIM Note: maturase Location: 1876383-1876587 bp Feature: domain Description: GIIM Note: maturase Location: 1 876383-1 876587 bp Feature: gene Location: 1877995-1880811 bp Ori: ASF15021.1 Feature: domain Description: DAP2 Location: 1878586-1879063 bp Feature: domain Description: DAP2 Location: 1 878586-1 879063 bp Feature: domain Description: DAP2 Location: 1879102-1879393 bp Feature: domain Description: DAP2 Location: 1 8791 02-1 879393 bp Feature: domain Description: DAP2 Location: 1879783-1880746 bp Feature: domain Description: DAP2 Location: 1 879783-1 880746 bp Feature: gene Location: 1880824-1881003 bp Feature: gene Location: 3242652-3243521 bp Feature: gene Location: 3243666-3245381 bp Feature: gene Location: 3245458-3249132 bp Ori: ASF16096.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3246073-3246568 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3246073-3246568 bp Feature: domain Description: nitrilase_Rim1_like Location: 3248524-3248839 bp Feature: domain Description: nitrilase_Rim1 _like Location: 3248524-3248839 bp Feature: gene Location: 3249171-3250481 bp Ori: AVL27212.1 Feature: domain Description: PRK09737 Location: 3249348-3250464 bp Feature: domain Description: PRK09737 Location: 3249348-3250464 bp Feature: gene Location: 3250481-3252067 bp Ori: ASF16097.1 Feature: domain Description: HsdM Location: 3250487-3252056 bp Feature: domain Description: HsdM Location: 3250487-3252056 bp Feature: gene Location: 4416104-4416355 bp Ori: ASF17034.1 Feature: domain Description: IbaG Location: 4416107-4416341 bp Feature: domain Description: IbaG Location: 441 61 07-441 6341 bp Feature: gene Location: 4416368-4417627 bp Ori: ASF17035.1 Gene: murA Feature: domain Description: MurA Location: 4416374-4417625 bp Feature: domain Description: MurA Location: 441 6374-441 7625 bp Feature: gene Location: 4418601-4419950 bp Ori: ASF17036.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4418883-4419501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 8883-441 9501 bp Feature: domain Description: GIIM Note: maturase Location: 4419549-4419753 bp Feature: domain Description: GIIM Note: maturase Location: 441 9549-441 9753 bp Feature: gene Location: 4420010-4420603 bp Feature: gene Location: 4420669-4421460 bp Ori: ASF17693.1 Feature: domain Description: PRK13746 Location: 4420672-4421452 bp Feature: domain Description: PRK1 3746 Location: 4420672-4421 452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT integrase_gron (TIGR02249), PRK13746 (aminoglycoside resistance protein; Provisional), RVT-GII, GIIM (pfam08388), DAP2 (COG1506), RVT-UG1, nitrilase_Rim1_like (cd07574), PRK09737 (type I restriction-modification system specificity subunit), HsdM (COG0286), IbaG (COG5007)
MurA (COG0766)