myRT

myRT report for GCA_002209425.1_ASM220942v1

Download annotations/find similar RTs

Seq: CP022106.1 Halobacillus halophilus strain HL2HP6 chromosome, complete genome (4148997 bp)
Overview 1 RT 1: 226424-236564 bp 2 RT 2: 673481-678527 bp 3 RT 3: 1003162-1008746 bp 4 RT 4: 1502788-1514310 bp 5 RT 5: 1527854-1533138 bp Neighborhood of RT #1 [226424, 236581] IlvB GAF GAF PRK10060 RVT-GII HNHc FeuA FepD Neighborhood of RT #2 [673481, 678547] RDD YdiL RVT-GII HNHc DUF2187 Neighborhood of RT #3 [1003162, 1008763] YaeI RVT-Retrons PRK09291 ManC Neighborhood of RT #4 [1502788, 1514310] RVT-GII HNHc RVT-GII HNHc Neighborhood of RT #5 [1527854, 1533158] RVT-GII HNHc PRK03140 Feature: gene Location: 226424-228058 bp Ori: ASF37823.1 Feature: domain Description: IlvB Location: 226427-228023 bp Feature: domain Description: IlvB Location: 226427-228023 bp Feature: gene Location: 228055-230877 bp Ori: ASF37824.1 Feature: domain Description: GAF Location: 228124-228562 bp Feature: domain Description: GAF Location: 2281 24-228562 bp Feature: domain Description: GAF Location: 228820-229048 bp Feature: domain Description: GAF Location: 228820-229048 bp Feature: domain Description: PRK10060 Location: 229216-230863 bp Feature: domain Description: PRK1 0060 Location: 22921 6-230863 bp Feature: gene Location: 231231-233012 bp Ori: ASF41419.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231489-232188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 489-2321 88 bp Feature: domain Description: HNHc Note: nucleases Location: 232743-232881 bp Feature: domain Description: HNHc Note: nucleases Location: 232743-232881 bp Feature: gene Location: 234365-235333 bp Ori: ASF37825.1 Feature: domain Description: FeuA Location: 234530-235280 bp Feature: domain Description: FeuA Location: 234530-235280 bp Feature: gene Location: 235526-236581 bp Ori: ASF37826.1 Feature: domain Description: FepD Location: 235607-236564 bp Feature: domain Description: FepD Location: 235607-236564 bp Feature: gene Location: 673481-673903 bp Ori: ASF38208.1 Feature: domain Description: RDD Location: 673505-673880 bp Feature: domain Description: RDD Location: 673505-673880 bp Feature: gene Location: 674006-674701 bp Ori: ASF38209.1 Feature: domain Description: YdiL Location: 674033-674666 bp Feature: domain Description: YdiL Location: 674033-674666 bp Feature: gene Location: 675597-677378 bp Ori: ASF41439.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675855-676554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675855-676554 bp Feature: domain Description: HNHc Note: nucleases Location: 677109-677247 bp Feature: domain Description: HNHc Note: nucleases Location: 6771 09-677247 bp Feature: gene Location: 677834-678034 bp Feature: gene Location: 678260-678547 bp Ori: ASF38211.1 Feature: domain Description: DUF2187 Location: 678353-678527 bp Feature: domain Description: DUF21 87 Location: 678353-678527 bp Feature: gene Location: 1003162-1004154 bp Ori: ASF38508.1 Feature: domain Description: YaeI Location: 1003192-1004143 bp Feature: domain Description: YaeI Location: 1 0031 92-1 0041 43 bp Feature: gene Location: 1004557-1005489 bp Feature: gene Location: 1005486-1006424 bp Ori: ASF38510.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1005588-1006143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 005588-1 0061 43 bp Feature: gene Location: 1006991-1007776 bp Ori: ASF38511.1 Feature: domain Description: PRK09291 Location: 1006994-1007771 bp Feature: domain Description: PRK09291 Location: 1 006994-1 007771 bp Feature: gene Location: 1008398-1008763 bp Ori: ASF38512.1 Feature: domain Description: ManC Location: 1008422-1008746 bp Feature: domain Description: ManC Location: 1 008422-1 008746 bp Feature: gene Location: 1502788-1503021 bp Feature: gene Location: 1503926-1504177 bp Feature: gene Location: 1504977-1506758 bp Ori: ASF41463.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1505235-1505934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 505235-1 505934 bp Feature: domain Description: HNHc Note: nucleases Location: 1506489-1506627 bp Feature: domain Description: HNHc Note: nucleases Location: 1 506489-1 506627 bp Feature: gene Location: 1507012-1507296 bp Feature: gene Location: 1507509-1507742 bp Feature: gene Location: 1508868-1509428 bp Feature: gene Location: 1509555-1510040 bp Feature: gene Location: 1510873-1512654 bp Ori: ASF41464.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1511131-1511830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 1 1 31 -1 51 1 830 bp Feature: domain Description: HNHc Note: nucleases Location: 1512385-1512523 bp Feature: domain Description: HNHc Note: nucleases Location: 1 51 2385-1 51 2523 bp Feature: gene Location: 1512915-1513448 bp Feature: gene Location: 1513696-1514310 bp Feature: gene Location: 1527854-1528042 bp Feature: gene Location: 1528087-1529013 bp Feature: gene Location: 1529845-1531626 bp Ori: ASF41466.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1530103-1530802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5301 03-1 530802 bp Feature: domain Description: HNHc Note: nucleases Location: 1531357-1531495 bp Feature: domain Description: HNHc Note: nucleases Location: 1 531 357-1 531 495 bp Feature: gene Location: 1531855-1532166 bp Feature: gene Location: 1532367-1533158 bp Ori: ASF38985.1 Gene: psd Feature: domain Description: PRK03140 Location: 1532370-1533138 bp Feature: domain Description: PRK031 40 Location: 1 532370-1 5331 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IlvB (COG0028), GAF (smart00065), PRK10060 (cyclic di-GMP phosphodiesterase), RVT-GII, HNHc (smart00507), FeuA (cd01138), FepD (COG0609), RDD (pfam06271), YdiL (COG1266), DUF2187 (pfam09953)
YaeI (COG1408), RVT-Retrons, PRK09291 (SDR family oxidoreductase), ManC (COG0662), PRK03140 (phosphatidylserine decarboxylase; Provisional)