myRT

myRT report for GCA_002210025.1_ASM221002v1

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Seq: CP019649.1 Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm6 chromosome, complete genome (4999862 bp)
Overview 1 RT 1: 3365553-3370001 bp 2 RT 2: 4071583-4077427 bp Neighborhood of RT #1 [3365553, 3370001] PRK05658 PRK10201 RVT-UG11 Neighborhood of RT #2 [4071583, 4077432] INT_P4_C RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 3365553-3367535 bp Ori: ASF66079.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 3365691-3367533 bp Feature: domain Description: PRK05658 Location: 3365691 -3367533 bp Feature: gene Location: 3367659-3368165 bp Ori: ASF66080.1 Gene: mug Feature: domain Description: PRK10201 Location: 3367662-3368160 bp Feature: domain Description: PRK1 0201 Location: 3367662-33681 60 bp Feature: gene Location: 3368489-3369115 bp Ori: ASF66081.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3368492-3368927 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 3368492-3368927 bp Feature: gene Location: 3369223-3369408 bp Feature: gene Location: 3369750-3370001 bp Feature: gene Location: 4071583-4072293 bp Ori: ASF66756.1 Feature: domain Description: INT_P4_C Location: 4071691-4072222 bp Feature: domain Description: INT_P4_C Location: 4071 691 -4072222 bp Feature: gene Location: 4072618-4073580 bp Feature: gene Location: 4073580-4074515 bp Ori: ASF66758.1 Gene: ret Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4073691-4074276 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4073691 -4074276 bp Feature: gene Location: 4075317-4076504 bp Ori: ASF66760.1 Gene: mdtL Feature: domain Description: PRK10473 Location: 4075320-4076496 bp Feature: domain Description: PRK1 0473 Location: 4075320-4076496 bp Feature: gene Location: 4076473-4077432 bp Ori: ASF66761.1 Gene: yidZ Feature: domain Description: PRK10216 Location: 4076476-4077427 bp Feature: domain Description: PRK1 021 6 Location: 4076476-4077427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)