myRT

myRT report for GCA_002211505.1_ASM221150v1

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Seq: CP021981.1 Vibrio anguillarum strain 87-9-116 chromosome 2, complete sequence (1207658 bp)
Overview 1 RT 1: 381148-388001 bp 2 RT 2: 674220-683051 bp 3 RT 3: 715829-723138 bp 4 RT 4: 820383-828093 bp Neighborhood of RT #1 [381148, 388021] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-Retrons AAA_15 AAA_15 Hypoth_Ymh Neighborhood of RT #2 [674220, 683068] RhaT RVT_N RVT-GII GIIM UvrA UvrA UvrA AslB Neighborhood of RT #3 [715829, 723302] DUF2235 RVT_N RVT-GII SMC_prok_B Neighborhood of RT #4 [820383, 828098] DEXQc_UvrD DEXQc_UvrD RecB AAA_15 TOPRIM_OLD RVT_N RVT-GII GIIM umuC Feature: gene Location: 381148-381501 bp Ori: ASF93594.1 Feature: domain Description: TnpB_IS66 Location: 381175-381457 bp Feature: domain Description: TnpB_IS66 Location: 381 1 75-381 457 bp Feature: gene Location: 381561-383102 bp Ori: ASF93595.1 Feature: domain Description: LZ_Tnp_IS66 Location: 381687-381894 bp Feature: domain Description: LZ_Tnp_IS66 Location: 381 687-381 894 bp Feature: domain Description: zf-IS66 Location: 381918-382050 bp Feature: domain Description: zf-IS66 Location: 381 91 8-382050 bp Feature: domain Description: DDE_Tnp_IS66 Location: 382110-382959 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3821 1 0-382959 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 382980-383088 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 382980-383088 bp Feature: gene Location: 383680-384780 bp Ori: ASF93596.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 383821-384379 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 383821 -384379 bp Feature: gene Location: 384956-387073 bp Ori: ASF93597.1 Feature: domain Description: AAA_15 Location: 384959-385376 bp Feature: domain Description: AAA_1 5 Location: 384959-385376 bp Feature: domain Description: AAA_15 Location: 385511-385940 bp Feature: domain Description: AAA_1 5 Location: 38551 1 -385940 bp Feature: gene Location: 387221-388021 bp Ori: ASF93598.1 Feature: domain Description: Hypoth_Ymh Location: 387641-388001 bp Feature: domain Description: Hypoth_Ymh Location: 387641 -388001 bp Feature: gene Location: 674220-675101 bp Ori: ASF93891.1 Feature: domain Description: RhaT Location: 674226-675072 bp Feature: domain Description: RhaT Location: 674226-675072 bp Feature: gene Location: 675443-675712 bp Feature: gene Location: 675920-677392 bp Ori: ASF93892.1 Gene: ltrA Feature: domain Description: RVT_N Location: 675968-676211 bp Feature: domain Description: RVT_N Location: 675968-67621 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676256-676883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676256-676883 bp Feature: domain Description: GIIM Note: maturase Location: 676940-677168 bp Feature: domain Description: GIIM Note: maturase Location: 676940-6771 68 bp Feature: gene Location: 678081-681785 bp Ori: ASF93893.1 Feature: domain Description: UvrA Location: 678087-679149 bp Feature: domain Description: UvrA Location: 678087-6791 49 bp Feature: domain Description: UvrA Location: 679161-680640 bp Feature: domain Description: UvrA Location: 6791 61 -680640 bp Feature: domain Description: UvrA Location: 681123-681666 bp Feature: domain Description: UvrA Location: 681 1 23-681 666 bp Feature: gene Location: 681782-683068 bp Ori: ASF93894.1 Feature: domain Description: AslB Location: 682043-683051 bp Feature: domain Description: AslB Location: 682043-683051 bp Feature: gene Location: 715829-718540 bp Ori: ASF93923.1 Feature: domain Description: DUF2235 Location: 717107-717938 bp Feature: domain Description: DUF2235 Location: 71 71 07-71 7938 bp Feature: gene Location: 719244-719429 bp Feature: gene Location: 719408-720879 bp Gene: ltrA Feature: domain Description: RVT_N Location: 719456-719696 bp Feature: domain Description: RVT_N Location: 71 9456-71 9696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 719744-720251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 9744-720251 bp Feature: gene Location: 720988-721260 bp Feature: gene Location: 721809-723302 bp Ori: ASF93926.1 Feature: domain Description: SMC_prok_B Location: 722379-723138 bp Feature: domain Description: SMC_prok_B Location: 722379-7231 38 bp Feature: gene Location: 820383-822296 bp Ori: ASF93993.1 Feature: domain Description: DEXQc_UvrD Location: 820455-820722 bp Feature: domain Description: DEXQc_UvrD Location: 820455-820722 bp Feature: domain Description: DEXQc_UvrD Location: 820794-821037 bp Feature: domain Description: DEXQc_UvrD Location: 820794-821 037 bp Feature: domain Description: RecB Location: 822009-822210 bp Feature: domain Description: RecB Location: 822009-82221 0 bp Feature: gene Location: 822278-824407 bp Ori: ASF93994.1 Feature: domain Description: AAA_15 Location: 822281-823460 bp Feature: domain Description: AAA_1 5 Location: 822281 -823460 bp Feature: domain Description: TOPRIM_OLD Location: 823649-823928 bp Feature: domain Description: TOPRIM_OLD Location: 823649-823928 bp Feature: gene Location: 825214-826686 bp Ori: ASF93995.1 Gene: ltrA Feature: domain Description: RVT_N Location: 825262-825505 bp Feature: domain Description: RVT_N Location: 825262-825505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825550-826177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825550-8261 77 bp Feature: domain Description: GIIM Note: maturase Location: 826240-826462 bp Feature: domain Description: GIIM Note: maturase Location: 826240-826462 bp Feature: gene Location: 826602-826799 bp Feature: gene Location: 826842-828098 bp Ori: ASF93996.1 Feature: domain Description: umuC Location: 826845-828093 bp Feature: domain Description: umuC Location: 826845-828093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-Retrons, AAA_15 (pfam13175), Hypoth_Ymh (pfam09509), RhaT (TIGR00776), RVT_N (pfam13655)
RVT-GII, GIIM (pfam08388), UvrA (COG0178), AslB (COG0641), DUF2235 (pfam09994), SMC_prok_B (TIGR02168), DEXQc_UvrD (cd17932), RecB (COG4998), TOPRIM_OLD (cd01026), umuC (PRK03609)

Seq: CP021980.1 Vibrio anguillarum strain 87-9-116 chromosome 1, complete sequence (3130467 bp)
Overview 1 RT 1: 1589823-1594750 bp 2 RT 2: 2969546-2976348 bp Neighborhood of RT #1 [1589823, 1595415] RVT-Retrons Ser_Recombinase Recombinase Zn_ribbon_recom Neighborhood of RT #2 [2969546, 2976419] InsE RVT_N RVT-GII GIIM Big_7 Big_7 ChiA1_BD Big_7 Big_7 Glyco_hydro_18 Feature: gene Location: 1589823-1590218 bp Feature: gene Location: 1590208-1590507 bp Feature: gene Location: 1590588-1591727 bp Ori: ASF91876.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1590828-1591455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159082 8-1591455 bp Feature: gene Location: 1591875-1593083 bp Feature: gene Location: 1593550-1595415 bp Ori: ASF91878.1 Feature: domain Description: Ser_Recombinase Location: 1593589-1594030 bp Feature: domain Description: Ser_Recombinase Location: 1593589-1594030 bp Feature: domain Description: Recombinase Location: 1594183-1594453 bp Feature: domain Description: Recombinase Location: 1594183-1594453 bp Feature: domain Description: Zn_ribbon_recom Location: 1594576-1594750 bp Feature: domain Description: Zn_ribbon_recom Location: 1594576-1594750 bp Feature: gene Location: 2969546-2969863 bp Feature: gene Location: 2969993-2970651 bp Feature: domain Description: InsE Location: 2970005-2970263 bp Feature: domain Description: InsE Location: 2 970005-2 9702 63 bp Feature: gene Location: 2971623-2973095 bp Ori: ASF93093.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2971671-2971914 bp Feature: domain Description: RVT_N Location: 2 971671-2 971914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2971959-2972586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 971959-2 972 586 bp Feature: domain Description: GIIM Note: maturase Location: 2972643-2972871 bp Feature: domain Description: GIIM Note: maturase Location: 2 972 643-2 972 871 bp Feature: gene Location: 2973181-2973372 bp Feature: gene Location: 2973531-2976419 bp Ori: ASF93095.1 Feature: domain Description: Big_7 Location: 2974047-2974221 bp Feature: domain Description: Big_7 Location: 2 974047-2 9742 2 1 bp Feature: domain Description: Big_7 Location: 2974335-2974548 bp Feature: domain Description: Big_7 Location: 2 974335-2 974548 bp Feature: domain Description: ChiA1_BD Location: 2974641-2974749 bp Feature: domain Description: ChiA1_BD Location: 2 974641-2 974749 bp Feature: domain Description: Big_7 Location: 2974824-2975034 bp Feature: domain Description: Big_7 Location: 2 97482 4-2 975034 bp Feature: domain Description: Big_7 Location: 2975112-2975304 bp Feature: domain Description: Big_7 Location: 2 975112 -2 975304 bp Feature: domain Description: Glyco_hydro_18 Location: 2975418-2976348 bp Feature: domain Description: Glyco_hydro_18 Location: 2 975418-2 976348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Ser_Recombinase (cl02788), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), InsE (COG2963), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Big_7 (pfam17957), ChiA1_BD (cd12214)
Glyco_hydro_18 (pfam00704)