myRT

myRT report for GCA_002214745.2_ASM221474v2

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Seq: CP016828.1 Escherichia coli strain FORC_043 chromosome, complete genome (5244443 bp)
Overview 1 RT 1: 878616-884045 bp 2 RT 2: 1248156-1252458 bp 3 RT 3: 4526583-4530802 bp 4 RT 4: 4722056-4728086 bp 5 RT 5: 4736784-4741396 bp 6 RT 6: 4744313-4752026 bp Neighborhood of RT #1 [878616, 884056] COG3547 PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #2 [1248156, 1252460] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [4526583, 4530816] RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [4722056, 4728088] InsE PHA02517 RVT-GII GIIM PHA02517 TonB-siderophor Neighborhood of RT #5 [4736784, 4741398] COG3547 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [4744313, 4752028] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 878616-879692 bp Ori: ASI49206.1 Feature: domain Description: COG3547 Location: 878655-879576 bp Feature: domain Description: COG3547 Location: 878655-879576 bp Feature: gene Location: 879911-880039 bp Ori: ASI49207.1 Feature: domain Description: PHA02517 Location: 879914-880004 bp Feature: domain Description: PHA0251 7 Location: 87991 4-880004 bp Feature: gene Location: 880234-881757 bp Ori: ASI49208.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880507-881239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880507-881 239 bp Feature: domain Description: GIIM Note: maturase Location: 881314-881512 bp Feature: domain Description: GIIM Note: maturase Location: 881 31 4-881 51 2 bp Feature: gene Location: 882349-882588 bp Ori: ASI49209.1 Feature: domain Description: PHA02517 Location: 882352-882523 bp Feature: domain Description: PHA0251 7 Location: 882352-882523 bp Feature: gene Location: 882905-884056 bp Ori: ASI49210.1 Feature: domain Description: HTH_38 Location: 882914-883028 bp Feature: domain Description: HTH_38 Location: 88291 4-883028 bp Feature: domain Description: Tra8 Location: 883064-884045 bp Feature: domain Description: Tra8 Location: 883064-884045 bp Feature: gene Location: 1248156-1249025 bp Feature: gene Location: 1249028-1249414 bp Ori: ASI49583.1 Feature: domain Description: PHA02517 Location: 1249031-1249412 bp Feature: domain Description: PHA0251 7 Location: 1 249031 -1 24941 2 bp Feature: gene Location: 1249591-1251114 bp Ori: ASI49584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249864-1250596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 249864-1 250596 bp Feature: domain Description: GIIM Note: maturase Location: 1250671-1250869 bp Feature: domain Description: GIIM Note: maturase Location: 1 250671 -1 250869 bp Feature: gene Location: 1251706-1252185 bp Ori: ASI49585.1 Feature: domain Description: PHA02517 Location: 1251766-1252120 bp Feature: domain Description: PHA0251 7 Location: 1 251 766-1 2521 20 bp Feature: gene Location: 1252185-1252460 bp Ori: ASI49586.1 Feature: domain Description: InsE Location: 1252206-1252458 bp Feature: domain Description: InsE Location: 1 252206-1 252458 bp Feature: gene Location: 4526583-4526693 bp Feature: gene Location: 4527010-4527153 bp Feature: gene Location: 4527918-4529441 bp Ori: ASI52925.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4528191-4528923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45281 91 -4528923 bp Feature: domain Description: GIIM Note: maturase Location: 4528998-4529196 bp Feature: domain Description: GIIM Note: maturase Location: 4528998-45291 96 bp Feature: gene Location: 4530033-4530458 bp Ori: ASI52926.1 Feature: domain Description: PHA02517 Location: 4530057-4530393 bp Feature: domain Description: PHA0251 7 Location: 4530057-4530393 bp Feature: gene Location: 4530514-4530816 bp Ori: ASI52927.1 Feature: domain Description: InsE Location: 4530553-4530802 bp Feature: domain Description: InsE Location: 4530553-4530802 bp Feature: gene Location: 4722056-4722331 bp Ori: ASI53130.1 Feature: domain Description: InsE Location: 4722077-4722329 bp Feature: domain Description: InsE Location: 4722077-4722329 bp Feature: gene Location: 4722331-4722810 bp Ori: ASI53131.1 Feature: domain Description: PHA02517 Location: 4722391-4722745 bp Feature: domain Description: PHA0251 7 Location: 4722391 -4722745 bp Feature: gene Location: 4723402-4724925 bp Ori: ASI53132.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4723675-4724407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4723675-4724407 bp Feature: domain Description: GIIM Note: maturase Location: 4724482-4724680 bp Feature: domain Description: GIIM Note: maturase Location: 4724482-4724680 bp Feature: gene Location: 4725102-4725488 bp Ori: ASI53133.1 Feature: domain Description: PHA02517 Location: 4725105-4725486 bp Feature: domain Description: PHA0251 7 Location: 47251 05-4725486 bp Feature: gene Location: 4725890-4728088 bp Ori: ASI53134.1 Feature: domain Description: TonB-siderophor Location: 4726025-4728086 bp Feature: domain Description: TonB-siderophor Location: 4726025-4728086 bp Feature: gene Location: 4736784-4737917 bp Ori: ASI53144.1 Feature: domain Description: COG3547 Location: 4736811-4737789 bp Feature: domain Description: COG3547 Location: 473681 1 -4737789 bp Feature: gene Location: 4737966-4738352 bp Ori: ASI53145.1 Feature: domain Description: PHA02517 Location: 4737969-4738350 bp Feature: domain Description: PHA0251 7 Location: 4737969-4738350 bp Feature: gene Location: 4738529-4740052 bp Ori: ASI53146.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4738802-4739534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4738802-4739534 bp Feature: domain Description: GIIM Note: maturase Location: 4739609-4739807 bp Feature: domain Description: GIIM Note: maturase Location: 4739609-4739807 bp Feature: gene Location: 4740644-4741123 bp Ori: ASI53147.1 Feature: domain Description: PHA02517 Location: 4740704-4741058 bp Feature: domain Description: PHA0251 7 Location: 4740704-4741 058 bp Feature: gene Location: 4741123-4741398 bp Ori: ASI53148.1 Feature: domain Description: InsE Location: 4741144-4741396 bp Feature: domain Description: InsE Location: 4741 1 44-4741 396 bp Feature: gene Location: 4744313-4747648 bp Ori: ASI53154.1 Feature: domain Description: Peptidase_S6 Location: 4744316-4745855 bp Feature: domain Description: Peptidase_S6 Location: 474431 6-4745855 bp Feature: domain Description: autotrans_barl Location: 4746419-4747646 bp Feature: domain Description: autotrans_barl Location: 474641 9-4747646 bp Feature: gene Location: 4748596-4748982 bp Ori: ASI53155.1 Feature: domain Description: PHA02517 Location: 4748599-4748980 bp Feature: domain Description: PHA0251 7 Location: 4748599-4748980 bp Feature: gene Location: 4749159-4750682 bp Ori: ASI53156.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4749432-4750164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4749432-47501 64 bp Feature: domain Description: GIIM Note: maturase Location: 4750239-4750437 bp Feature: domain Description: GIIM Note: maturase Location: 4750239-4750437 bp Feature: gene Location: 4751274-4751753 bp Ori: ASI53157.1 Feature: domain Description: PHA02517 Location: 4751334-4751688 bp Feature: domain Description: PHA0251 7 Location: 4751 334-4751 688 bp Feature: gene Location: 4751753-4752028 bp Ori: ASI53158.1 Feature: domain Description: InsE Location: 4751774-4752026 bp Feature: domain Description: InsE Location: 4751 774-4752026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963), TonB-siderophor (TIGR01783), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: CP023552.1 Escherichia coli strain FORC_043 plasmid pFORC43, complete sequence (77422 bp)
Overview 1 RT 1: 137-2265 bp 2 RT 2: 33888-37818 bp 3 RT 3: 62966-66176 bp Neighborhood of RT #1 [137, 2265] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [33888, 37883] umuC PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [62966, 66176] TnpB_IS66 COG3436 RVT-GII GIIM Feature: gene Location: 137-1804 bp Ori: ATI10834.1 Feature: domain Description: RVT_N Location: 185-422 bp Feature: domain Description: RVT_N Location: 185-42 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-1115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-1115 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1400 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1400 bp Feature: domain Description: HNHc Note: nucleases Location: 1610-1769 bp Feature: domain Description: HNHc Note: nucleases Location: 1610-1769 bp Feature: gene Location: 1841-1957 bp Feature: gene Location: 1960-2265 bp Feature: gene Location: 33888-34742 bp Ori: ATI10903.1 Feature: domain Description: umuC Location: 33942-34740 bp Feature: domain Description: umuC Location: 33942 -34740 bp Feature: gene Location: 34726-35172 bp Ori: ATI10904.1 Feature: domain Description: PHA02517 Location: 34729-35170 bp Feature: domain Description: PHA02 517 Location: 3472 9-35170 bp Feature: gene Location: 35289-36797 bp Ori: ATI10905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35547-36279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35547-362 79 bp Feature: domain Description: GIIM Note: maturase Location: 36354-36552 bp Feature: domain Description: GIIM Note: maturase Location: 36354-36552 bp Feature: gene Location: 36883-37191 bp Feature: gene Location: 37404-37883 bp Ori: ATI10907.1 Feature: domain Description: PHA02517 Location: 37464-37818 bp Feature: domain Description: PHA02 517 Location: 37464-37818 bp Feature: gene Location: 62966-63316 bp Ori: ATI10954.1 Feature: domain Description: TnpB_IS66 Location: 62993-63284 bp Feature: domain Description: TnpB_IS66 Location: 62 993-632 84 bp Feature: gene Location: 63347-64273 bp Ori: ATI10955.1 Feature: domain Description: COG3436 Location: 63683-64163 bp Feature: domain Description: COG3436 Location: 63683-64163 bp Feature: gene Location: 64399-65403 bp Ori: ATI10956.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64402-64990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64402 -64990 bp Feature: domain Description: GIIM Note: maturase Location: 65038-65269 bp Feature: domain Description: GIIM Note: maturase Location: 65038-652 69 bp Feature: gene Location: 65612-66013 bp Feature: gene Location: 66030-66176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), umuC (PRK03609), PHA02517 (putative transposase OrfB; Reviewed), TnpB_IS66 (pfam05717), COG3436 (Transposase )