myRT

myRT report for GCA_002215135.1_ASM221513v1

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Seq: CP014636.1 Vibrio vulnificus strain CECT 4999 chromosome I, complete sequence (3394464 bp)
Overview 1 RT 1: 973010-977675 bp 2 RT 2: 1017327-1023714 bp 3 RT 3: 1881041-1886483 bp 4 RT 4: 2628150-2635122 bp Neighborhood of RT #1 [973010, 977689] CheW DUF2802 DUF2802 RVT-GII GIIM PRK13538 ccmB Neighborhood of RT #2 [1017327, 1023839] PRK10845 PRK09246 RVT-GII GIIM LysR PRK10693 Neighborhood of RT #3 [1881041, 1886483] KatG COG3169 RVT-GII GIIM PRK10354 Neighborhood of RT #4 [2628150, 2635124] RVT-GII GIIM SDF PRK14150 Feature: gene Location: 973010-973504 bp Ori: ASJ38009.1 Feature: domain Description: CheW Location: 973040-973496 bp Feature: domain Description: CheW Location: 973040-973496 bp Feature: gene Location: 973504-974004 bp Ori: ASJ38010.1 Feature: domain Description: DUF2802 Location: 973627-973693 bp Feature: domain Description: DUF2802 Location: 973627-973693 bp Feature: domain Description: DUF2802 Location: 973708-973909 bp Feature: domain Description: DUF2802 Location: 973708-973909 bp Feature: gene Location: 974809-976092 bp Ori: ASJ38011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975022-975643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975022-975643 bp Feature: domain Description: GIIM Note: maturase Location: 975694-975907 bp Feature: domain Description: GIIM Note: maturase Location: 975694-975907 bp Feature: gene Location: 976402-977019 bp Ori: ASJ38012.1 Feature: domain Description: PRK13538 Location: 976405-977014 bp Feature: domain Description: PRK1 3538 Location: 976405-97701 4 bp Feature: gene Location: 977021-977689 bp Ori: ASJ38013.1 Feature: domain Description: ccmB Location: 977045-977675 bp Feature: domain Description: ccmB Location: 977045-977675 bp Feature: gene Location: 1017327-1017818 bp Ori: ASJ38043.1 Feature: domain Description: PRK10845 Location: 1017330-1017807 bp Feature: domain Description: PRK1 0845 Location: 1 01 7330-1 01 7807 bp Feature: gene Location: 1017855-1019369 bp Ori: ASJ38044.1 Feature: domain Description: PRK09246 Location: 1017858-1019355 bp Feature: domain Description: PRK09246 Location: 1 01 7858-1 01 9355 bp Feature: gene Location: 1020189-1021472 bp Ori: ASJ38045.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020402-1021023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020402-1 021 023 bp Feature: domain Description: GIIM Note: maturase Location: 1021074-1021287 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 074-1 021 287 bp Feature: gene Location: 1021579-1022454 bp Ori: ASJ38046.1 Feature: domain Description: LysR Location: 1021582-1022437 bp Feature: domain Description: LysR Location: 1 021 582-1 022437 bp Feature: gene Location: 1022733-1023839 bp Ori: ASJ38047.1 Feature: domain Description: PRK10693 Location: 1022877-1023714 bp Feature: domain Description: PRK1 0693 Location: 1 022877-1 02371 4 bp Feature: gene Location: 1881041-1883212 bp Ori: ASJ38771.1 Feature: domain Description: KatG Location: 1881059-1883210 bp Feature: domain Description: KatG Location: 1 881 059-1 88321 0 bp Feature: gene Location: 1883276-1883626 bp Ori: ASJ38772.1 Feature: domain Description: COG3169 Location: 1883282-1883615 bp Feature: domain Description: COG31 69 Location: 1 883282-1 88361 5 bp Feature: gene Location: 1883749-1885032 bp Ori: ASJ38773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1883962-1884583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 883962-1 884583 bp Feature: domain Description: GIIM Note: maturase Location: 1884634-1884847 bp Feature: domain Description: GIIM Note: maturase Location: 1 884634-1 884847 bp Feature: gene Location: 1885854-1886066 bp Ori: ASJ38774.1 Feature: domain Description: PRK10354 Location: 1885857-1886061 bp Feature: domain Description: PRK1 0354 Location: 1 885857-1 886061 bp Feature: gene Location: 1886298-1886483 bp Feature: gene Location: 2628150-2629328 bp Feature: gene Location: 2629468-2630754 bp Feature: gene Location: 2630879-2632162 bp Ori: ASJ39411.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631092-2631713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631 092-2631 71 3 bp Feature: domain Description: GIIM Note: maturase Location: 2631764-2631977 bp Feature: domain Description: GIIM Note: maturase Location: 2631 764-2631 977 bp Feature: gene Location: 2632966-2634246 bp Ori: ASJ39412.1 Feature: domain Description: SDF Location: 2632984-2634178 bp Feature: domain Description: SDF Location: 2632984-26341 78 bp Feature: gene Location: 2634528-2635124 bp Ori: ASJ39413.1 Feature: domain Description: PRK14150 Location: 2634531-2635122 bp Feature: domain Description: PRK1 41 50 Location: 2634531 -26351 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheW (smart00260), DUF2802 (pfam10975), RVT-GII, GIIM (pfam08388), PRK13538 (cytochrome c biogenesis heme-transporting ATPase CcmA), ccmB (TIGR01190), PRK10845 (colicin V production protein; Provisional), PRK09246 (amidophosphoribosyltransferase; Provisional), LysR (COG0583), PRK10693 (two-component system response regulator RssB)
KatG (COG0376), COG3169 (Uncharacterized conserved protein, DUF486 family ), PRK10354 (RNA chaperone/antiterminator CspA), SDF (pfam00375), PRK14150 (heat shock protein GrpE; Provisional)

Seq: CP014637.1 Vibrio vulnificus strain CECT 4999 chromosome II, complete sequence (1700225 bp)
Overview 1 RT 1: 213924-219233 bp 2 RT 2: 406944-414576 bp 3 RT 3: 868072-874898 bp Neighborhood of RT #1 [213924, 219233] PRK15397 UP_EcUdp-like RVT-GII GIIM CSP_CDS YsdA Neighborhood of RT #2 [406944, 414806] 3a0107s02c PRK14253 RVT-GII GIIM GAF PleD BatD Neighborhood of RT #3 [868072, 874900] OmpR DUF3404 BaeS RVT-GII GIIM HTH_29 HTH_33 DDE_3 pntB Feature: gene Location: 213924-214676 bp Ori: ASJ40315.1 Feature: domain Description: PRK15397 Location: 213939-214635 bp Feature: domain Description: PRK15397 Location: 2 13939-2 14635 bp Feature: gene Location: 214673-215401 bp Ori: ASJ40316.1 Feature: domain Description: UP_EcUdp-like Location: 214688-215390 bp Feature: domain Description: UP_EcUdp-like Location: 2 14688-2 15390 bp Feature: gene Location: 216205-217488 bp Ori: ASJ40317.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216418-217039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 16418-2 17039 bp Feature: domain Description: GIIM Note: maturase Location: 217090-217303 bp Feature: domain Description: GIIM Note: maturase Location: 2 17090-2 17303 bp Feature: gene Location: 217694-218290 bp Ori: ASJ40318.1 Feature: domain Description: CSP_CDS Location: 217709-217892 bp Feature: domain Description: CSP_CDS Location: 2 17709-2 17892 bp Feature: domain Description: YsdA Location: 217991-218237 bp Feature: domain Description: YsdA Location: 2 17991-2 182 37 bp Feature: gene Location: 218548-219233 bp Feature: gene Location: 406944-407807 bp Ori: ASJ40446.1 Feature: domain Description: 3a0107s02c Location: 406989-407793 bp Feature: domain Description: 3a0107s02 c Location: 406989-407793 bp Feature: gene Location: 407866-408615 bp Ori: ASJ40447.1 Gene: pstB Feature: domain Description: PRK14253 Location: 407869-408613 bp Feature: domain Description: PRK142 53 Location: 407869-408613 bp Feature: gene Location: 409444-410727 bp Ori: ASJ40448.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409657-410278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409657-4102 78 bp Feature: domain Description: GIIM Note: maturase Location: 410329-410542 bp Feature: domain Description: GIIM Note: maturase Location: 41032 9-410542 bp Feature: gene Location: 410969-413089 bp Ori: ASJ40449.1 Feature: domain Description: GAF Location: 411557-411977 bp Feature: domain Description: GAF Location: 411557-411977 bp Feature: domain Description: PleD Location: 412478-413066 bp Feature: domain Description: PleD Location: 412 478-413066 bp Feature: gene Location: 413175-414806 bp Ori: ASJ40450.1 Feature: domain Description: BatD Location: 413220-414576 bp Feature: domain Description: BatD Location: 4132 2 0-414576 bp Feature: gene Location: 868072-868734 bp Ori: ASJ40823.1 Feature: domain Description: OmpR Location: 868084-868729 bp Feature: domain Description: OmpR Location: 868084-86872 9 bp Feature: gene Location: 868709-870160 bp Ori: ASJ40824.1 Feature: domain Description: DUF3404 Location: 868763-869531 bp Feature: domain Description: DUF3404 Location: 868763-869531 bp Feature: domain Description: BaeS Location: 869531-870143 bp Feature: domain Description: BaeS Location: 869531-870143 bp Feature: gene Location: 870333-871598 bp Ori: ASJ40825.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870528-871149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87052 8-871149 bp Feature: domain Description: GIIM Note: maturase Location: 871200-871413 bp Feature: domain Description: GIIM Note: maturase Location: 8712 00-871413 bp Feature: gene Location: 871654-872694 bp Ori: ASJ40826.1 Feature: domain Description: HTH_29 Location: 871750-871915 bp Feature: domain Description: HTH_2 9 Location: 871750-871915 bp Feature: domain Description: HTH_33 Location: 871948-872122 bp Feature: domain Description: HTH_33 Location: 871948-872 12 2 bp Feature: domain Description: DDE_3 Location: 872155-872584 bp Feature: domain Description: DDE_3 Location: 872 155-872 584 bp Feature: gene Location: 873506-874900 bp Ori: ASJ40827.1 Gene: pntB Feature: domain Description: pntB Location: 873509-874898 bp Feature: domain Description: pntB Location: 873509-874898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15397 (nicotinamide riboside transporter PnuC; Provisional), UP_EcUdp-like (cd17767), RVT-GII, GIIM (pfam08388), CSP_CDS (cd04458), YsdA (COG3326), 3a0107s02c (TIGR00974), PRK14253 (phosphate ABC transporter ATP-binding protein; Provisional), GAF (smart00065), PleD (COG3706)
BatD (pfam13584), OmpR (COG0745), DUF3404 (pfam11884), BaeS (COG0642), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), pntB (PRK09444)