myRT

myRT report for GCA_002215345.1_ASM221534v1

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Seq: CP017293.1 Pseudomonas aeruginosa strain PA83 chromosome, complete genome (6816227 bp)
Overview 1 RT 1: 666452-677186 bp 2 RT 2: 6530741-6535849 bp Neighborhood of RT #1 [666452, 677188] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [6530741, 6535857] PRK13360 COG3450 RVT_N RVT-GII GIIM HNHc rpmG Feature: gene Location: 666452-666787 bp Ori: ASJ82909.1 Feature: domain Description: NERD Location: 666551-666722 bp Feature: domain Description: NERD Location: 666551 -666722 bp Feature: gene Location: 666880-668001 bp Ori: ASJ82910.1 Feature: domain Description: COG3177 Location: 666898-667990 bp Feature: domain Description: COG31 77 Location: 666898-667990 bp Feature: gene Location: 668725-670410 bp Ori: ASJ82911.1 Feature: domain Description: RVT_N Location: 668782-669022 bp Feature: domain Description: RVT_N Location: 668782-669022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669070-669706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669070-669706 bp Feature: domain Description: GIIM Note: maturase Location: 669760-669991 bp Feature: domain Description: GIIM Note: maturase Location: 669760-669991 bp Feature: domain Description: HNH Note: nucleases Location: 670243-670381 bp Feature: domain Description: HNH Note: nucleases Location: 670243-670381 bp Feature: gene Location: 671491-675228 bp Ori: ASJ82912.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 671599-672256 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 671 599-672256 bp Feature: domain Description: PRK09776 Location: 672469-672940 bp Feature: domain Description: PRK09776 Location: 672469-672940 bp Feature: domain Description: PAS Location: 673012-673522 bp Feature: domain Description: PAS Location: 67301 2-673522 bp Feature: domain Description: PRK10060 Location: 673531-675178 bp Feature: domain Description: PRK1 0060 Location: 673531 -6751 78 bp Feature: gene Location: 675335-677188 bp Ori: ASJ82913.1 Feature: domain Description: PRK05658 Location: 675347-677186 bp Feature: domain Description: PRK05658 Location: 675347-6771 86 bp Feature: gene Location: 6530741-6532069 bp Ori: ASJ88214.1 Feature: domain Description: PRK13360 Location: 6530747-6532061 bp Feature: domain Description: PRK1 3360 Location: 6530747-6532061 bp Feature: gene Location: 6532136-6532498 bp Ori: ASJ88215.1 Feature: domain Description: COG3450 Location: 6532139-6532484 bp Feature: domain Description: COG3450 Location: 65321 39-6532484 bp Feature: gene Location: 6532702-6534408 bp Ori: ASJ88216.1 Feature: domain Description: RVT_N Location: 6532759-6532999 bp Feature: domain Description: RVT_N Location: 6532759-6532999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6533047-6533683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6533047-6533683 bp Feature: domain Description: GIIM Note: maturase Location: 6533737-6533968 bp Feature: domain Description: GIIM Note: maturase Location: 6533737-6533968 bp Feature: domain Description: HNHc Note: nucleases Location: 6534178-6534352 bp Feature: domain Description: HNHc Note: nucleases Location: 65341 78-6534352 bp Feature: gene Location: 6534525-6534680 bp Feature: gene Location: 6535702-6535857 bp Ori: ASJ88218.1 Feature: domain Description: rpmG Location: 6535705-6535849 bp Feature: domain Description: rpmG Location: 6535705-6535849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), HNHc (smart00507), rpmG (PRK00595)