myRT

myRT report for GCA_002218025.2_ASM221802v2

Download annotations/find similar RTs

Seq: AP018680.1 Vibrio casei DSM 22364 DNA, chromosome 1, complete geome (2756634 bp)
Overview 1 RT 1: 1088849-1098300 bp Neighborhood of RT #1 [1088849, 1098320] NACHT RVT-UG2 INT_RitA_C_like HsdM Feature: gene Location: 1088849-1089319 bp Feature: gene Location: 1089736-1093779 bp Feature: domain Description: NACHT Location: 1089946-1090183 bp Feature: domain Description: NACHT Location: 1 089946-1 0901 83 bp Feature: gene Location: 1094521-1095831 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1094722-1095535 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 094722-1 095535 bp Feature: gene Location: 1095911-1096507 bp Feature: domain Description: INT_RitA_C_like Location: 1095959-1096490 bp Feature: domain Description: INT_RitA_C_like Location: 1 095959-1 096490 bp Feature: gene Location: 1096617-1098320 bp Feature: domain Description: HsdM Location: 1096638-1098300 bp Feature: domain Description: HsdM Location: 1 096638-1 098300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NACHT (pfam05729), RVT-UG2, INT_RitA_C_like (cd01188), HsdM (COG0286)

Seq: AP018682.1 Vibrio casei DSM 22364 plasmid 1 DNA, complete genome (160294 bp)
Overview 1 RT 1: 44381-49695 bp Neighborhood of RT #1 [44381, 49709] MPP_PA3087 COG3547 RVT_N RVT-GII TnpB_IS66 Feature: gene Location: 44381-45748 bp Feature: domain Description: MPP_PA3087 Location: 44408-45254 bp Feature: domain Description: MPP_PA3087 Location: 44408-452 54 bp Feature: gene Location: 46143-47186 bp Feature: domain Description: COG3547 Location: 46206-47154 bp Feature: domain Description: COG3547 Location: 462 06-47154 bp Feature: gene Location: 47849-48952 bp Feature: domain Description: RVT_N Location: 47897-48137 bp Feature: domain Description: RVT_N Location: 47897-48137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48185-48812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48185-48812 bp Feature: gene Location: 49012-49386 bp Feature: gene Location: 49383-49709 bp Feature: domain Description: TnpB_IS66 Location: 49410-49695 bp Feature: domain Description: TnpB_IS66 Location: 49410-49695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPP_PA3087 (cd07413), COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717)