myRT

myRT report for GCA_002219245.1_ASM221924v1

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Seq: CP015267.1 Mycobacterium chimaera strain ZUERICH-2 chromosome, complete genome (6150513 bp)
Overview 1 RT 1: 836282-841356 bp 2 RT 2: 912355-918207 bp 3 RT 3: 2085082-2091837 bp 4 RT 4: 4096487-4101741 bp Neighborhood of RT #1 [836282, 841517] IS285 RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #2 [912355, 918218] MhpC RVT-GII GIIM TetR_N TetR_C_35 CypX Neighborhood of RT #3 [2085082, 2091848] COG3462 RVT-GII GIIM NuoN NuoM Neighborhood of RT #4 [4096487, 4101741] AdaB RVT-GII GIIM LZ_Tnp_IS481 Tra5 Feature: gene Location: 836282-836710 bp Ori: ASL13289.1 Feature: domain Description: IS285 Location: 836345-836582 bp Feature: domain Description: IS285 Location: 836345-836582 bp Feature: gene Location: 837076-837402 bp Feature: gene Location: 837779-839566 bp Ori: ASL13291.1 Feature: domain Description: RVT_N Location: 837809-838046 bp Feature: domain Description: RVT_N Location: 837809-838046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838106-838766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8381 06-838766 bp Feature: domain Description: GIIM Note: maturase Location: 838835-839066 bp Feature: domain Description: GIIM Note: maturase Location: 838835-839066 bp Feature: gene Location: 839692-840339 bp Feature: gene Location: 840279-841517 bp Ori: ASL13293.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 840291-840762 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 840291 -840762 bp Feature: domain Description: Transposase_20 Location: 841104-841356 bp Feature: domain Description: Transposase_20 Location: 841 1 04-841 356 bp Feature: gene Location: 912355-913251 bp Ori: ASL13360.1 Feature: domain Description: MhpC Location: 912379-913231 bp Feature: domain Description: MhpC Location: 91 2379-91 3231 bp Feature: gene Location: 913299-913514 bp Feature: gene Location: 914044-915492 bp Ori: ASL13362.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914362-915049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 4362-91 5049 bp Feature: domain Description: GIIM Note: maturase Location: 915124-915319 bp Feature: domain Description: GIIM Note: maturase Location: 91 51 24-91 531 9 bp Feature: gene Location: 916305-916829 bp Ori: ASL13363.1 Feature: domain Description: TetR_N Location: 916308-916389 bp Feature: domain Description: TetR_N Location: 91 6308-91 6389 bp Feature: domain Description: TetR_C_35 Location: 916458-916791 bp Feature: domain Description: TetR_C_35 Location: 91 6458-91 6791 bp Feature: gene Location: 916917-918218 bp Ori: ASL13364.1 Feature: domain Description: CypX Location: 916992-918207 bp Feature: domain Description: CypX Location: 91 6992-91 8207 bp Feature: gene Location: 2085082-2085345 bp Ori: ASL14418.1 Feature: domain Description: COG3462 Location: 2085106-2085325 bp Feature: domain Description: COG3462 Location: 20851 06-2085325 bp Feature: gene Location: 2085481-2085630 bp Feature: gene Location: 2086409-2087881 bp Ori: ASL14420.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086751-2087447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086751 -2087447 bp Feature: domain Description: GIIM Note: maturase Location: 2087516-2087729 bp Feature: domain Description: GIIM Note: maturase Location: 208751 6-2087729 bp Feature: gene Location: 2088936-2090354 bp Ori: ASL14421.1 Feature: domain Description: NuoN Location: 2088969-2090340 bp Feature: domain Description: NuoN Location: 2088969-2090340 bp Feature: gene Location: 2090358-2091848 bp Ori: ASL14422.1 Feature: domain Description: NuoM Location: 2090361-2091837 bp Feature: domain Description: NuoM Location: 2090361 -2091 837 bp Feature: gene Location: 4096487-4096768 bp Feature: gene Location: 4096848-4097009 bp Ori: ASL16141.1 Feature: domain Description: AdaB Location: 4096851-4096980 bp Feature: domain Description: AdaB Location: 4096851 -4096980 bp Feature: gene Location: 4097330-4098802 bp Ori: ASL16142.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4097672-4098368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4097672-4098368 bp Feature: domain Description: GIIM Note: maturase Location: 4098437-4098656 bp Feature: domain Description: GIIM Note: maturase Location: 4098437-4098656 bp Feature: gene Location: 4099409-4101217 bp Ori: ASL16143.1 Feature: domain Description: LZ_Tnp_IS481 Location: 4099457-4099631 bp Feature: domain Description: LZ_Tnp_IS481 Location: 4099457-4099631 bp Feature: domain Description: Tra5 Location: 4099634-4100294 bp Feature: domain Description: Tra5 Location: 4099634-41 00294 bp Feature: gene Location: 4101562-4101741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), MhpC (COG0596), TetR_N (pfam00440), TetR_C_35 (pfam18556), CypX (COG2124)
COG3462 (Uncharacterized membrane protein ), NuoN (COG1007), NuoM (COG1008), AdaB (COG0350), LZ_Tnp_IS481 (pfam13011), Tra5 (COG2801)