myRT

myRT report for GCA_002219265.1_ASM221926v1

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Seq: CP015275.1 Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 3, complete sequence (32134 bp)
Overview 1 RT 1: 26545-31041 bp Neighborhood of RT #1 [26545, 31041] HAUS5 RVT-UG23 PinE Feature: gene Location: 26545-26691 bp Feature: gene Location: 27329-27931 bp Ori: ASL24315.1 Feature: domain Description: HAUS5 Location: 27647-27911 bp Feature: domain Description: HAUS5 Location: 27647-2791 1 bp Feature: gene Location: 28330-29874 bp Ori: ASL24316.1 Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 28528-29179 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 28528-291 79 bp Feature: gene Location: 30077-30694 bp Ori: ASL24317.1 Feature: domain Description: PinE Location: 30119-30674 bp Feature: domain Description: PinE Location: 301 1 9-30674 bp Feature: gene Location: 30691-31041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAUS5 (pfam14817), RVT-UG23, PinE (COG1961)

Seq: CP015272.1 Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome (6175731 bp)
Overview 1 RT 1: 968831-973905 bp 2 RT 2: 1044904-1050756 bp 3 RT 3: 2215115-2221870 bp 4 RT 4: 4203425-4208679 bp Neighborhood of RT #1 [968831, 974066] IS285 RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #2 [1044904, 1050767] MhpC RVT-GII GIIM TetR_N TetR_C_35 CypX Neighborhood of RT #3 [2215115, 2221881] COG3462 RVT-GII GIIM NuoN NuoM Neighborhood of RT #4 [4203425, 4208679] AdaB RVT-GII GIIM LZ_Tnp_IS481 Tra5 Feature: gene Location: 968831-969259 bp Ori: ASL19425.1 Feature: domain Description: IS285 Location: 968894-969131 bp Feature: domain Description: IS2 85 Location: 968894-969131 bp Feature: gene Location: 969625-969951 bp Feature: gene Location: 970328-972115 bp Ori: ASL19427.1 Feature: domain Description: RVT_N Location: 970358-970595 bp Feature: domain Description: RVT_N Location: 970358-970595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970655-971315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970655-971315 bp Feature: domain Description: GIIM Note: maturase Location: 971384-971615 bp Feature: domain Description: GIIM Note: maturase Location: 971384-971615 bp Feature: gene Location: 972241-972888 bp Feature: gene Location: 972828-974066 bp Ori: ASL19429.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 972840-973311 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 972 840-973311 bp Feature: domain Description: Transposase_20 Location: 973653-973905 bp Feature: domain Description: Transposase_2 0 Location: 973653-973905 bp Feature: gene Location: 1044904-1045800 bp Ori: ASL19495.1 Feature: domain Description: MhpC Location: 1044928-1045780 bp Feature: domain Description: MhpC Location: 104492 8-1045780 bp Feature: gene Location: 1045848-1046063 bp Feature: gene Location: 1046593-1048041 bp Ori: ASL19497.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046911-1047598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046911-1047598 bp Feature: domain Description: GIIM Note: maturase Location: 1047673-1047868 bp Feature: domain Description: GIIM Note: maturase Location: 1047673-1047868 bp Feature: gene Location: 1048854-1049378 bp Ori: ASL19498.1 Feature: domain Description: TetR_N Location: 1048857-1048938 bp Feature: domain Description: TetR_N Location: 1048857-1048938 bp Feature: domain Description: TetR_C_35 Location: 1049007-1049340 bp Feature: domain Description: TetR_C_35 Location: 1049007-1049340 bp Feature: gene Location: 1049466-1050767 bp Ori: ASL19499.1 Feature: domain Description: CypX Location: 1049541-1050756 bp Feature: domain Description: CypX Location: 1049541-1050756 bp Feature: gene Location: 2215115-2215378 bp Ori: ASL20548.1 Feature: domain Description: COG3462 Location: 2215139-2215358 bp Feature: domain Description: COG3462 Location: 2 2 15139-2 2 15358 bp Feature: gene Location: 2215514-2215663 bp Feature: gene Location: 2216442-2217914 bp Ori: ASL20550.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2216784-2217480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 16784-2 2 17480 bp Feature: domain Description: GIIM Note: maturase Location: 2217549-2217762 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 17549-2 2 17762 bp Feature: gene Location: 2218969-2220387 bp Ori: ASL20551.1 Feature: domain Description: NuoN Location: 2219002-2220373 bp Feature: domain Description: NuoN Location: 2 2 19002 -2 2 2 0373 bp Feature: gene Location: 2220391-2221881 bp Ori: ASL20552.1 Feature: domain Description: NuoM Location: 2220394-2221870 bp Feature: domain Description: NuoM Location: 2 2 2 0394-2 2 2 1870 bp Feature: gene Location: 4203425-4203706 bp Feature: gene Location: 4203786-4203947 bp Ori: ASL22265.1 Feature: domain Description: AdaB Location: 4203789-4203918 bp Feature: domain Description: AdaB Location: 42 03789-42 03918 bp Feature: gene Location: 4204268-4205740 bp Ori: ASL22266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4204610-4205306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 04610-42 05306 bp Feature: domain Description: GIIM Note: maturase Location: 4205375-4205594 bp Feature: domain Description: GIIM Note: maturase Location: 42 05375-42 05594 bp Feature: gene Location: 4206347-4208155 bp Ori: ASL22267.1 Feature: domain Description: LZ_Tnp_IS481 Location: 4206395-4206569 bp Feature: domain Description: LZ_Tnp_IS481 Location: 42 06395-42 06569 bp Feature: domain Description: Tra5 Location: 4206572-4207232 bp Feature: domain Description: Tra5 Location: 42 06572 -42 072 32 bp Feature: gene Location: 4208500-4208679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), MhpC (COG0596), TetR_N (pfam00440), TetR_C_35 (pfam18556), CypX (COG2124)
COG3462 (Uncharacterized membrane protein ), NuoN (COG1007), NuoM (COG1008), AdaB (COG0350), LZ_Tnp_IS481 (pfam13011), Tra5 (COG2801)